Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 4.4e-161 571.2 290 100.0
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 3.3e-140 501.9 280 91.4
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 2.5e-95 352.8 271 66.4
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 3.6e-62 242.7 280 48.6
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.3e-59 234.2 265 47.9
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 8.3e-59 231.5 288 46.9
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.1e-58 229.2 275 46.9
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 5.4e-58 228.8 251 49.8
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 3.5e-57 226.1 276 47.1
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 5.9e-57 225.3 257 47.9
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 7.8e-57 224.9 285 47.0
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.9e-56 223.0 278 46.0
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 3.8e-56 222.6 281 45.2
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 5.0e-56 222.2 273 46.2
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.5e-55 220.7 262 48.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.5e-55 220.7 288 46.9
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.9e-55 220.3 275 45.8
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.9e-55 220.3 275 45.8
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.9e-55 220.3 253 48.2
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 4.3e-55 219.2 283 44.9
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.2e-54 217.6 260 46.5
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.6e-54 217.2 256 46.5
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.1e-54 216.9 276 45.7
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 2.8e-54 216.5 262 46.9
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 4.7e-54 215.7 284 44.0
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 6.1e-54 215.3 272 45.6
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.4e-53 214.2 256 46.9
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 1.8e-53 213.8 276 45.7
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.8e-53 213.8 278 46.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 2.3e-53 213.4 287 44.3
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 3.0e-53 213.0 262 45.4
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 5.2e-53 212.2 261 47.9
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 6.8e-53 211.8 287 45.3
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.5e-52 210.7 255 49.8
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.5e-52 210.7 258 44.6
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.4e-52 209.5 278 43.5
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 4.4e-52 209.1 259 44.4
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 5.7e-52 208.8 282 44.3
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 7.5e-52 208.4 284 44.4
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.7e-51 207.2 263 46.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.2e-51 206.8 292 46.2
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 2.9e-51 206.5 263 47.1
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 4.9e-51 205.7 275 44.0
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.4e-51 205.3 264 45.5
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 6.4e-51 205.3 255 47.5
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 6.4e-51 205.3 260 46.2
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 6.4e-51 205.3 282 44.7
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.1e-50 204.5 287 44.3
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.1e-50 204.5 263 44.9
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.1e-50 204.5 286 44.4
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.8e-50 203.8 282 43.6
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 4.1e-50 202.6 280 45.0
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 4.1e-50 202.6 236 49.6
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 5.4e-50 202.2 291 43.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 5.4e-50 202.2 267 42.7
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 5.4e-50 202.2 280 43.6
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 1.2e-49 201.1 282 44.7
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.6e-49 200.7 286 42.7
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.6e-49 200.7 287 43.6
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.6e-49 200.7 287 41.8
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 2.0e-49 200.3 266 45.1
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 3.5e-49 199.5 263 43.7
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 7.8e-49 198.4 254 44.5
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 7.8e-49 198.4 273 43.6
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.0e-48 198.0 271 45.0
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.3e-48 197.6 272 45.2
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.3e-48 197.6 280 42.5
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 1.7e-48 197.2 272 45.2
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.7e-48 197.2 264 46.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.3e-48 196.8 262 44.3
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 3.0e-48 196.4 253 43.5
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 6.6e-48 195.3 282 44.0
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 8.6e-48 194.9 279 42.3
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 8.6e-48 194.9 267 42.3
Zm00001eb228440 Zea mays HOM05D009296 ORTHO05D006405 8.6e-48 194.9 217 53.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.5e-47 194.1 267 42.7
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.5e-47 194.1 271 42.8
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.3e-47 193.0 283 43.1
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 3.3e-47 193.0 289 42.9
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 7.3e-47 191.8 283 42.8
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 9.5e-47 191.4 283 43.1
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 2.3e-45 186.8 259 40.2
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 8.9e-45 184.9 242 45.5
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.5e-44 184.1 270 41.5
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 2.6e-44 183.3 256 43.8
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 5.8e-44 182.2 269 40.5
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 7.5e-44 181.8 272 41.9
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 3.7e-43 179.5 267 39.7
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 4.1e-42 176.0 269 40.9
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.6e-41 174.1 299 37.8
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 6.0e-41 172.2 256 43.4
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.3e-40 171.0 276 40.2
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 2.3e-40 170.2 269 40.5
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 3.9e-40 169.5 283 38.5
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.5e-39 166.8 265 40.0
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 2.8e-38 163.3 209 45.5
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 8.1e-38 161.8 290 39.0
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.1e-37 161.4 190 47.4
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 3.1e-37 159.8 209 43.5
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.2e-36 157.9 342 36.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 2.6e-36 156.8 271 39.1
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 5.8e-36 155.6 205 44.9
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 9.8e-36 154.8 195 47.2
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 9.2e-34 148.3 254 39.0
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.6e-33 147.5 178 43.8
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 3.8e-27 126.3 183 44.3
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 6.4e-27 125.6 163 42.3
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 3.2e-26 123.2 255 35.7
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.6e-25 120.9 159 41.5
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 1.6e-22 110.9 186 38.7
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 1.5e-20 104.4 102 53.9
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 5.8e-20 102.4 167 40.1
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.2e-17 94.7 167 37.1
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 7.8e-17 92.0 216 31.5
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.7e-16 90.9 118 41.5
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.7e-16 90.9 184 36.4
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 8.7e-16 88.6 184 36.4
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 5.6e-15 85.9 137 39.4
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.1e-14 84.0 90 50.0
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 6.2e-14 82.4 165 33.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-13 80.9 126 38.1
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.0e-13 79.7 107 43.9
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.6e-12 77.0 137 37.2
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 9.9e-12 75.1 133 34.6
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 4.2e-10 69.7 59 52.5
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.2e-09 68.2 63 57.1
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.1e-08 62.8 121 35.5
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.1e-08 62.8 121 35.5
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 5.1e-08 62.8 75 45.3
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-06 58.2 85 40.0
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-06 57.8 85 40.0
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 1.6e-06 57.8 174 29.3
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 6.2e-06 55.8 52 55.8


User provided reference genes

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