Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb400070 Zea mays HOM05D003560 ORTHO05D004500 7.2e-53 210.3 105 100.0
Zm00001eb206680 Zea mays HOM05D003560 ORTHO05D004500 3.3e-50 201.4 103 98.1
Zm00001eb234440 Zea mays HOM05D003560 ORTHO05D004500 1.6e-49 199.1 104 96.2
Zm00001eb233940 Zea mays HOM05D003560 ORTHO05D004500 3.1e-48 194.9 103 94.2
Zm00001eb257740 Zea mays HOM05D003560 ORTHO05D004500 2.0e-42 175.6 93 96.8
Os02g0179800 Oryza sativa ssp. japonica HOM05D003560 ORTHO05D004500 2.2e-41 172.2 103 83.5
Zm00001eb110220 Zea mays HOM05D003560 ORTHO05D004500 2.8e-41 171.8 93 94.6
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 1.3e-30 136.3 103 62.1
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 1.7e-30 136.0 104 62.5
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 3.8e-30 134.8 104 63.5
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 3.8e-30 134.8 103 60.2
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 6.5e-30 134.0 103 63.1
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 6.5e-30 134.0 103 63.1
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 1.1e-29 133.3 103 58.3
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 1.5e-29 132.9 103 60.2
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 3.2e-29 131.7 104 59.6
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 3.2e-29 131.7 104 59.6
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 4.2e-29 131.3 104 60.6
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.2e-29 131.3 103 59.2
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 5.5e-29 131.0 104 61.5
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 5.5e-29 131.0 103 59.2
Hma1.2p1_0222F.1_g093900 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 5.5e-29 131.0 102 59.8
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 9.4e-29 130.2 104 61.5
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 9.4e-29 130.2 103 58.3
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 9.4e-29 130.2 103 58.3
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 9.4e-29 130.2 103 58.3
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 9.4e-29 130.2 103 58.3
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 9.4e-29 130.2 103 59.2
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 9.4e-29 130.2 103 59.2
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 1.2e-28 129.8 104 61.5
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 1.6e-28 129.4 104 61.5
GSVIVG01023682001 Vitis vinifera HOM05D003560 ORTHO05D004500 1.6e-28 129.4 104 61.5
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 2.1e-28 129.0 104 61.5
AUR62025371 Chenopodium quinoa HOM05D003560 ORTHO05D004500 2.1e-28 129.0 104 61.5
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 2.1e-28 129.0 104 61.5
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 2.1e-28 129.0 104 60.6
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 3.6e-28 128.3 103 60.2
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 4.7e-28 127.9 104 59.6
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 4.7e-28 127.9 104 59.6
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 4.7e-28 127.9 104 60.6
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 6.1e-28 127.5 104 57.7
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 6.1e-28 127.5 104 59.6
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 8.0e-28 127.1 105 61.9
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 8.0e-28 127.1 103 56.3
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 8.0e-28 127.1 103 59.2
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 1.0e-27 126.7 103 60.2
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 1.4e-27 126.3 105 61.9
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 1.4e-27 126.3 105 58.1
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 1.4e-27 126.3 104 56.7
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 1.4e-27 126.3 104 57.7
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 1.8e-27 125.9 104 59.6
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 1.8e-27 125.9 104 59.6
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 1.8e-27 125.9 103 57.3
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.8e-27 125.9 104 60.6
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 2.3e-27 125.6 104 58.7
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 2.3e-27 125.6 103 57.3
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 2.3e-27 125.6 103 57.3
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 2.3e-27 125.6 102 57.8
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 3.0e-27 125.2 103 57.3
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 3.0e-27 125.2 103 57.3
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 3.0e-27 125.2 104 58.7
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 3.0e-27 125.2 104 60.6
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 4.0e-27 124.8 103 57.3
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 5.2e-27 124.4 101 60.4
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 5.2e-27 124.4 103 59.2
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 5.2e-27 124.4 103 56.3
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 6.7e-27 124.0 104 58.7
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 6.7e-27 124.0 104 58.7
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 6.7e-27 124.0 103 57.3
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 6.7e-27 124.0 104 58.7
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 6.7e-27 124.0 104 60.6
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 6.7e-27 124.0 104 58.7
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 6.7e-27 124.0 104 58.7
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 8.8e-27 123.6 103 60.2
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 8.8e-27 123.6 103 56.3
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 1.1e-26 123.2 104 57.7
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 1.5e-26 122.9 103 59.2
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 2.0e-26 122.5 104 57.7
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 2.0e-26 122.5 103 56.3
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 2.6e-26 122.1 104 57.7
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 2.6e-26 122.1 104 57.7
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 2.6e-26 122.1 104 57.7
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 2.6e-26 122.1 104 57.7
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 2.6e-26 122.1 104 57.7
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 3.3e-26 121.7 104 57.7
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 3.3e-26 121.7 103 58.3
BcaC09g51868 Brassica carinata HOM05D003560 ORTHO05D004500 4.4e-26 121.3 104 57.7
A01p07380 Brassica napus HOM05D003560 ORTHO05D004500 4.4e-26 121.3 104 57.7
C01p08140 Brassica napus HOM05D003560 ORTHO05D004500 4.4e-26 121.3 104 57.7
BolC1t00801H Brassica oleracea HOM05D003560 ORTHO05D004500 4.4e-26 121.3 104 57.7
BraA01t00687Z Brassica rapa HOM05D003560 ORTHO05D004500 4.4e-26 121.3 104 57.7
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 7.5e-26 120.6 104 55.8
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 7.5e-26 120.6 103 55.3
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 7.5e-26 120.6 104 56.7
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 7.5e-26 120.6 103 57.3
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 7.5e-26 120.6 104 56.7
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 7.5e-26 120.6 104 56.7
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 7.5e-26 120.6 103 55.3
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 9.7e-26 120.2 104 55.8
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 9.7e-26 120.2 104 55.8
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 9.7e-26 120.2 103 57.3
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 9.7e-26 120.2 104 56.7
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 9.7e-26 120.2 104 55.8
unitig_37.g12751 Utricularia gibba HOM05D003560 ORTHO05D004500 1.3e-25 119.8 102 55.9
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 1.7e-25 119.4 104 57.7
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 1.7e-25 119.4 104 56.7
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 1.7e-25 119.4 103 55.3
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 2.8e-25 118.6 103 56.3
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 2.8e-25 118.6 104 56.7
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 3.7e-25 118.2 104 54.8
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 3.7e-25 118.2 104 56.7
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 4.8e-25 117.9 104 55.8
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 4.8e-25 117.9 104 59.6
THA.LOC104803909 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 4.8e-25 117.9 105 57.1
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 6.3e-25 117.5 104 54.8
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 6.3e-25 117.5 104 56.7
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 6.3e-25 117.5 104 53.8
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 6.3e-25 117.5 104 53.8
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 6.3e-25 117.5 103 55.3
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 8.2e-25 117.1 104 54.8
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 1.1e-24 116.7 103 57.3
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 1.4e-24 116.3 104 54.8
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 1.8e-24 115.9 104 54.8
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 4.1e-24 114.8 103 56.3
Ah.14g084380 Amaranthus hybridus HOM05D003560 ORTHO05D004500 5.3e-24 114.4 103 54.4
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 1.2e-23 113.2 104 52.9
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 1.2e-23 113.2 103 55.3
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 1.6e-23 112.8 104 53.8
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 1.6e-23 112.8 104 54.8
ECA236G1776 Erigeron canadensis HOM05D003560 ORTHO05D004500 1.6e-23 112.8 103 53.4
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 1.6e-23 112.8 100 60.0
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 1.0e-22 110.2 103 55.3
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 1.0e-22 110.2 103 54.4
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 1.0e-22 110.2 106 53.8
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 1.7e-22 109.4 104 55.8
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 2.9e-22 108.6 104 55.8
SMO301G0012 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 2.9e-22 108.6 104 56.7
Pp3c22_15890 Physcomitrium patens HOM05D003560 ORTHO05D004500 3.8e-22 108.2 100 58.0
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 1.9e-21 105.9 99 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4294 Anthoceros agrestis HOM05D003560 ORTHO05D004500 2.5e-21 105.5 104 52.9
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 3.2e-21 105.1 104 52.9
RcHm_v2.0_Chr5g0033091 Rosa chinensis HOM05D003560 ORTHO05D004500 4.2e-21 104.8 76 65.8
Mapoly0041s0089 Marchantia polymorpha HOM05D003560 ORTHO05D004500 7.2e-21 104.0 103 53.4
CDE05G3326 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 1.2e-20 103.2 104 53.8
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 1.2e-20 103.2 104 53.8
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 3.6e-20 101.7 103 52.4
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 6.1e-20 100.9 99 55.6
HanXRQChr05g0141571 Helianthus annuus HOM05D003560 ORTHO05D004500 6.1e-20 100.9 103 46.6
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 8.0e-20 100.5 79 63.3
vmacro06070 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 6.8e-19 97.4 75 64.0
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 1.5e-18 96.3 98 50.0
SMO361G0185 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 1.5e-18 96.3 105 51.4
SMO361G0456 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 1.5e-18 96.3 105 51.4
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 5.7e-18 94.4 73 61.6
CBR_g38482 Chara braunii HOM05D003560 ORTHO05D004500 2.5e-13 79.0 106 46.2
CBR_g55388 Chara braunii HOM05D003560 ORTHO05D004500 1.2e-12 76.6 109 44.0
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 1.2e-12 76.6 102 40.2
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 2.8e-09 65.5 103 37.9


User provided reference genes

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