Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 8.8e-168 593.6 308 100.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 2.4e-141 505.8 357 78.4
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.8e-112 409.8 363 66.9
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 6.2e-97 358.2 312 67.3
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 8.1e-97 357.8 356 61.8
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.8e-96 356.7 307 66.4
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.1e-96 355.9 305 67.2
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.5e-95 353.6 304 66.1
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.0e-95 353.2 367 59.4
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 4.5e-95 352.1 305 66.6
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 5.8e-95 351.7 311 63.7
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.6e-95 351.3 325 62.5
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 7.6e-95 351.3 307 66.1
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 9.9e-95 350.9 297 66.3
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 9.9e-95 350.9 305 65.9
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.3e-94 350.5 278 70.9
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.7e-94 350.1 296 66.2
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.7e-94 350.1 282 69.1
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.7e-94 350.1 286 66.1
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 2.2e-94 349.7 305 65.6
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 2.9e-94 349.4 313 65.8
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.9e-94 349.4 283 69.6
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 3.8e-94 349.0 313 65.5
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 3.8e-94 349.0 344 59.0
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 4.9e-94 348.6 307 65.5
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 4.9e-94 348.6 307 63.8
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 6.4e-94 348.2 310 65.5
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 6.4e-94 348.2 299 65.9
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 8.4e-94 347.8 286 66.4
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 8.4e-94 347.8 299 64.9
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.1e-93 347.4 296 65.5
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.1e-93 347.4 254 73.6
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.4e-93 347.1 309 65.4
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.9e-93 346.7 289 65.4
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.9e-93 346.7 308 64.9
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.4e-93 346.3 324 62.3
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 2.4e-93 346.3 297 65.3
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 3.2e-93 345.9 363 56.2
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.2e-93 345.9 360 56.7
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 3.2e-93 345.9 317 62.5
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 3.2e-93 345.9 279 66.7
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.2e-93 345.9 367 58.0
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 4.2e-93 345.5 308 64.9
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 4.2e-93 345.5 310 64.2
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 5.5e-93 345.1 283 67.1
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 5.5e-93 345.1 291 65.6
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 5.5e-93 345.1 296 64.9
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 5.5e-93 345.1 308 64.6
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 5.5e-93 345.1 287 66.6
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 5.5e-93 345.1 343 60.1
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 5.5e-93 345.1 365 56.7
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 7.1e-93 344.7 292 66.1
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 7.1e-93 344.7 293 66.2
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 7.1e-93 344.7 310 64.2
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 7.1e-93 344.7 252 73.4
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 7.1e-93 344.7 252 73.4
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 9.3e-93 344.4 325 60.9
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 9.3e-93 344.4 309 63.4
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 9.3e-93 344.4 309 62.8
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 9.3e-93 344.4 309 64.1
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.2e-92 344.0 296 64.9
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.2e-92 344.0 299 63.9
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.6e-92 343.6 296 64.9
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.6e-92 343.6 262 69.1
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.6e-92 343.6 307 64.2
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.1e-92 343.2 248 73.8
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 2.7e-92 342.8 273 69.2
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.7e-92 342.8 310 63.5
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 3.5e-92 342.4 324 60.8
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 3.5e-92 342.4 264 69.3
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 4.6e-92 342.0 303 64.4
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 4.6e-92 342.0 305 63.6
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 6.0e-92 341.7 317 62.1
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 6.0e-92 341.7 304 63.8
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 7.9e-92 341.3 296 64.2
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.9e-92 341.3 323 61.0
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-91 340.9 323 61.0
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-91 340.9 323 61.0
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.0e-91 340.9 309 62.8
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.0e-91 340.9 304 64.5
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.8e-91 340.1 299 64.9
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.3e-91 339.7 278 66.2
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.3e-91 339.7 289 65.1
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.0e-91 339.3 323 60.7
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.0e-91 339.3 323 60.7
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.0e-91 339.3 323 60.7
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 3.0e-91 339.3 255 68.6
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 3.0e-91 339.3 307 63.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 3.9e-91 339.0 291 63.9
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 3.9e-91 339.0 308 64.0
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 3.9e-91 339.0 335 58.2
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 3.9e-91 339.0 366 54.4
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 5.1e-91 338.6 269 68.4
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 6.7e-91 338.2 309 61.8
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 6.7e-91 338.2 288 66.3
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 6.7e-91 338.2 252 71.0
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 6.7e-91 338.2 252 71.0
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.1e-90 337.4 299 64.2
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.1e-90 337.4 299 64.2
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.1e-90 337.4 289 65.1
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.9e-90 336.7 315 62.2
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.9e-90 336.7 263 67.7
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.5e-90 336.3 317 61.5
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.5e-90 336.3 309 61.8
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 2.5e-90 336.3 309 62.8
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 5.6e-90 335.1 252 71.0
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.6e-89 333.6 314 61.8
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.6e-89 333.6 252 70.6
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.8e-89 332.8 302 62.3
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 8.2e-89 331.3 324 58.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.4e-88 330.5 322 60.2
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.4e-88 330.5 287 62.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.4e-88 330.5 302 61.6
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.8e-88 330.1 260 66.9
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.0e-87 326.6 302 61.9
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 5.8e-87 325.1 258 69.4
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.8e-87 325.1 256 67.2
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.6e-87 324.7 264 63.3
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.3e-86 323.9 293 62.1
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 4.9e-86 322.0 302 63.2
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 4.9e-86 322.0 305 59.7
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 8.4e-86 321.2 355 57.2
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 2.5e-85 319.7 236 72.5
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.1e-84 316.6 304 62.2
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 5.1e-83 312.0 368 53.8
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.5e-82 310.5 281 64.1
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 3.3e-82 309.3 305 58.4
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 8.2e-81 304.7 344 53.5
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.1e-80 304.3 251 64.5
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.1e-80 302.8 248 65.3
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 9.0e-80 301.2 341 54.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.6e-79 299.7 247 64.8
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 4.5e-79 298.9 347 52.7
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 2.9e-78 296.2 337 55.8
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 3.2e-77 292.7 225 68.4
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.0e-75 287.7 241 64.3
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.1e-72 277.7 290 53.4
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 6.1e-68 261.9 293 51.9
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 6.1e-68 261.9 248 58.5
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 7.9e-68 261.5 245 59.6
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 2.6e-55 219.9 244 52.9
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 8.3e-49 198.4 221 52.9
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.0e-46 191.4 149 67.1
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.0e-46 191.4 149 67.1
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.5e-42 177.6 99 91.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 8.3e-41 171.8 144 63.2
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.4e-40 171.0 147 63.3
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.7e-33 147.5 140 61.4
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.7e-30 137.5 150 56.7
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 4.1e-24 116.3 199 46.2
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 2.3e-22 110.5 61 91.8
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.6e-20 104.4 64 87.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.7e-09 66.6 102 42.2
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.9e-09 66.2 99 42.4


User provided reference genes

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