Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 5.3e-50 200.7 99 100.0
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.3e-35 152.9 146 61.0
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 8.3e-19 97.1 149 38.9
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 3.2e-18 95.1 145 41.4
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 7.0e-18 94.0 148 39.2
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 9.2e-18 93.6 150 39.3
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 1.2e-17 93.2 154 42.2
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 1.6e-17 92.8 151 40.4
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 1.6e-17 92.8 142 40.1
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 2.7e-17 92.0 151 38.4
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 2.7e-17 92.0 151 38.4
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.7e-17 92.0 151 38.4
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 3.5e-17 91.7 153 39.2
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 3.5e-17 91.7 152 39.5
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 3.5e-17 91.7 149 37.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 3.5e-17 91.7 149 37.6
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 3.5e-17 91.7 148 39.9
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 4.6e-17 91.3 154 37.7
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 1.0e-16 90.1 149 35.6
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 1.3e-16 89.7 144 40.3
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 1.3e-16 89.7 150 38.7
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 1.7e-16 89.4 143 39.2
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 1.7e-16 89.4 143 39.2
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 1.7e-16 89.4 143 40.6
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.7e-16 89.4 149 38.3
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.3e-16 89.0 147 38.1
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 2.3e-16 89.0 154 37.0
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 2.3e-16 89.0 151 37.7
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 3.0e-16 88.6 143 38.5
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 3.0e-16 88.6 143 39.2
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 3.0e-16 88.6 143 39.2
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 3.0e-16 88.6 152 38.2
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 3.0e-16 88.6 153 36.6
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 3.0e-16 88.6 115 50.4
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 3.0e-16 88.6 159 37.7
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 3.9e-16 88.2 154 38.3
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 3.9e-16 88.2 142 38.0
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 5.0e-16 87.8 150 38.7
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 6.6e-16 87.4 151 36.4
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 6.6e-16 87.4 153 37.3
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.1e-15 86.7 149 36.2
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 1.1e-15 86.7 151 38.4
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.5e-15 86.3 142 37.3
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.5e-15 86.3 149 36.2
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.5e-15 86.3 154 37.7
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.9e-15 85.9 142 37.3
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 1.9e-15 85.9 150 35.3
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.9e-15 85.9 149 35.6
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 2.5e-15 85.5 150 38.7
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 2.5e-15 85.5 142 37.3
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 2.5e-15 85.5 143 38.5
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 2.5e-15 85.5 142 37.3
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 2.5e-15 85.5 150 36.0
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 3.3e-15 85.1 150 38.0
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 4.3e-15 84.7 154 35.7
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 4.3e-15 84.7 146 36.3
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 4.3e-15 84.7 151 37.1
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 5.6e-15 84.3 151 37.1
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 5.6e-15 84.3 151 38.4
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 7.3e-15 84.0 150 38.0
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 7.3e-15 84.0 148 38.5
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.3e-15 84.0 148 36.5
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 7.3e-15 84.0 151 37.1
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 9.5e-15 83.6 145 35.9
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 9.5e-15 83.6 150 34.0
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 9.5e-15 83.6 154 35.1
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.2e-14 83.2 150 34.0
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.2e-14 83.2 150 34.0
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 1.2e-14 83.2 150 34.0
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 1.6e-14 82.8 154 35.1
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.6e-14 82.8 154 36.4
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.6e-14 82.8 142 38.0
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 1.6e-14 82.8 148 37.8
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 1.6e-14 82.8 147 39.5
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 1.6e-14 82.8 145 38.6
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 4.7e-14 81.3 151 36.4
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.1e-13 80.1 152 33.6
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 1.4e-13 79.7 144 37.5
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 1.4e-13 79.7 159 35.8
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 1.4e-13 79.7 154 35.7
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.8e-13 79.3 152 33.6
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 3.1e-13 78.6 150 34.7
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 4.0e-13 78.2 154 35.1
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 1.5e-12 76.3 144 36.1
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 1.5e-12 76.3 148 37.8
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 2.6e-12 75.5 145 35.9
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 5.8e-12 74.3 154 33.8
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 5.8e-12 74.3 154 33.8
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 1.1e-10 70.1 145 35.2
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 1.4e-10 69.7 158 30.4
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.9e-10 69.3 121 37.2
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 2.4e-10 68.9 152 33.6
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 2.4e-10 68.9 149 32.9
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 3.2e-10 68.6 149 34.2
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 2.1e-09 65.9 159 30.2
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 3.5e-09 65.1 139 30.9
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 3.5e-09 65.1 135 34.8
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.6e-09 64.7 56 62.5
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 7.8e-09 63.9 134 33.6
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 4.3e-07 58.2 134 29.9
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.1e-06 55.8 157 28.0
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.7e-06 54.7 107 33.6
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 6.2e-06 54.3 147 30.6


User provided reference genes

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