Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 0.0e+00 1252.3 633 100.0
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 5.8e-283 977.2 620 79.5
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 6.4e-181 638.3 559 60.6
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.3e-164 581.3 541 57.1
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.7e-163 579.7 541 56.9
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.3e-162 576.6 541 56.7
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 6.9e-159 565.1 535 57.2
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 9.0e-159 564.7 547 55.6
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.2e-158 564.3 541 56.6
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.5e-158 563.9 591 53.8
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.4e-158 562.8 591 53.5
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.4e-158 562.8 591 53.6
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 4.5e-158 562.4 548 56.6
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.3e-157 560.8 547 55.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.7e-157 560.5 586 53.9
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 2.9e-157 559.7 551 55.7
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.9e-157 559.7 541 56.0
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 2.5e-156 556.6 547 57.6
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 3.2e-156 556.2 547 55.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 5.5e-156 555.4 541 56.0
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 7.1e-156 555.1 560 54.1
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 9.3e-156 554.7 547 54.5
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.2e-155 554.3 561 54.5
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.1e-155 553.5 561 54.0
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.7e-155 553.1 548 55.1
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.7e-155 553.1 553 54.8
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.7e-155 553.1 558 53.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.7e-155 553.1 550 54.5
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 3.5e-155 552.7 552 55.1
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 3.5e-155 552.7 543 54.7
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 3.5e-155 552.7 576 53.1
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.0e-154 551.2 542 54.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.0e-154 551.2 541 55.1
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.3e-154 550.8 578 52.8
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.8e-154 550.4 555 54.6
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.8e-154 550.4 580 53.8
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.0e-154 549.7 561 56.1
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 3.0e-154 549.7 543 56.4
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 3.9e-154 549.3 578 52.6
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.9e-154 549.3 578 52.6
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.7e-154 548.5 541 54.3
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 8.7e-154 548.1 589 51.8
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-153 547.7 578 52.4
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.1e-153 547.7 540 53.7
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.5e-153 547.4 549 54.3
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.5e-153 547.4 560 53.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.5e-153 546.6 563 53.5
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.3e-153 546.2 578 52.4
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.4e-153 545.0 578 51.9
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 9.6e-153 544.7 543 54.7
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.6e-153 544.7 585 51.3
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.3e-152 544.3 548 54.6
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.3e-152 544.3 541 54.2
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.6e-152 543.9 561 55.8
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.7e-152 542.7 523 57.0
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 3.7e-152 542.7 540 54.4
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.3e-152 542.0 595 51.4
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.3e-152 542.0 595 51.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 8.2e-152 541.6 573 52.2
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.1e-151 541.2 544 55.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.1e-151 541.2 550 52.2
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.4e-151 540.8 544 55.7
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 4.1e-151 539.3 553 53.9
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 4.1e-151 539.3 553 53.9
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-150 537.7 544 55.7
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.2e-150 537.7 544 55.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.2e-150 537.7 544 55.7
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.5e-150 537.3 524 55.9
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.6e-150 536.6 614 50.0
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 4.5e-150 535.8 607 50.6
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 5.9e-150 535.4 548 55.1
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 5.9e-150 535.4 554 54.7
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.3e-149 534.3 541 54.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.7e-149 533.9 539 54.7
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.2e-149 533.5 550 53.8
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 2.2e-149 533.5 548 53.6
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 3.8e-149 532.7 553 54.6
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 3.8e-149 532.7 547 54.5
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 5.0e-149 532.3 543 54.1
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 5.0e-149 532.3 586 52.4
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 8.4e-149 531.6 543 54.3
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.1e-148 531.2 589 52.5
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.4e-148 530.8 554 52.2
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.2e-148 529.3 567 52.2
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 5.5e-148 528.9 552 51.8
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 7.2e-148 528.5 567 52.2
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.6e-147 527.3 550 52.7
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.0e-146 524.6 561 52.6
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.8e-146 523.9 549 53.0
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.8e-146 523.9 540 53.9
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.3e-146 523.5 548 51.6
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 3.0e-146 523.1 553 51.2
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 3.9e-146 522.7 562 52.8
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 8.7e-146 521.5 553 51.0
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.9e-145 520.4 547 53.7
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.7e-145 518.8 527 52.8
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 9.7e-145 518.1 553 51.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.8e-144 516.5 521 53.4
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 2.4e-143 513.5 579 50.4
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 3.1e-143 513.1 553 50.1
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 3.1e-143 513.1 553 51.7
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 7.7e-142 508.4 538 54.3
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 7.7e-142 508.4 538 54.3
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 7.7e-142 508.4 538 54.3
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-140 504.6 568 50.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.5e-140 503.4 558 50.9
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 3.2e-140 503.1 545 50.5
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.2e-139 501.1 539 53.4
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.6e-139 500.7 563 51.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.7e-139 500.0 522 52.1
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 1.5e-137 494.2 547 52.3
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 7.4e-137 491.9 517 52.2
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 9.7e-137 491.5 538 50.7
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.3e-136 491.1 557 50.1
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.8e-135 487.3 576 50.5
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.8e-135 487.3 523 52.2
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 7.7e-134 481.9 591 48.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 7.7e-134 481.9 554 48.9
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 6.1e-131 472.2 528 50.9
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.0e-122 444.9 527 50.3
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 8.2e-120 435.3 362 62.4
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.8e-119 434.1 511 49.9
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 7.2e-116 422.2 599 43.7
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.8e-114 417.5 559 45.1
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 2.0e-113 414.1 445 50.6
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.2e-112 410.6 553 43.0
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.7e-110 403.7 420 51.4
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.0e-109 401.7 413 53.8
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 2.0e-105 387.5 225 91.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.4e-103 381.3 404 50.5
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 7.7e-102 375.6 559 41.9
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.2e-70 271.9 324 46.9
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 4.0e-58 230.3 289 47.4
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.5e-54 217.2 262 48.1
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.0e-45 189.1 207 49.8
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 7.1e-39 166.4 200 50.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.9e-28 131.7 305 30.5
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 6.5e-24 116.7 90 67.8
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.7e-19 102.1 89 58.4
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.1e-18 99.4 194 32.5
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 7.7e-17 93.2 108 49.1
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 6.7e-13 80.1 194 30.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.4e-10 71.6 43 76.7
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 7.7e-09 66.6 59 52.5
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 9.4e-07 59.7 69 53.6


User provided reference genes

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