Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.4e-201 706.1 351 100.0
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 8.8e-148 527.3 360 75.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 2.0e-147 526.2 351 77.5
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 3.4e-131 472.2 335 70.1
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.9e-129 466.5 329 69.6
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.2e-129 465.7 329 69.3
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.2e-129 465.7 329 69.3
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 9.2e-129 464.2 330 69.1
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.2e-128 463.8 330 69.1
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 6.0e-128 461.5 330 68.8
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 5.0e-127 458.4 316 70.9
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.5e-126 456.8 331 67.4
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.5e-126 456.8 330 68.5
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.5e-126 456.8 328 67.7
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.5e-126 456.1 359 64.9
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 2.5e-126 456.1 359 64.6
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.3e-126 455.7 331 68.0
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 3.3e-126 455.7 329 67.8
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.3e-126 455.7 328 68.3
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.3e-126 455.7 330 69.7
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.3e-126 455.7 330 67.6
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 4.3e-126 455.3 351 65.8
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 7.3e-126 454.5 331 68.0
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.5e-126 454.1 329 67.8
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 9.5e-126 454.1 351 65.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 9.5e-126 454.1 329 67.8
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.2e-125 453.8 329 68.1
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.6e-125 453.4 333 67.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.8e-125 452.6 351 65.5
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 2.8e-125 452.6 344 65.1
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.8e-125 452.6 341 66.3
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 3.6e-125 452.2 319 68.7
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 3.6e-125 452.2 329 68.1
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 3.6e-125 452.2 316 69.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 4.7e-125 451.8 329 68.7
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 6.2e-125 451.4 332 66.9
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.2e-125 451.4 329 67.5
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.1e-124 450.7 346 66.5
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.4e-124 450.3 335 68.4
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.8e-124 449.9 329 67.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.8e-124 449.9 334 66.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 2.3e-124 449.5 349 64.8
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.3e-124 449.5 328 67.4
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 2.3e-124 449.5 329 67.2
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.1e-124 449.1 326 68.1
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.1e-124 449.1 328 67.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.1e-124 449.1 328 67.1
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 3.1e-124 449.1 317 69.4
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 3.1e-124 449.1 339 66.7
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 4.0e-124 448.7 329 66.6
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.0e-124 448.7 330 68.5
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 4.0e-124 448.7 343 66.5
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.0e-124 448.7 332 67.2
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 5.2e-124 448.4 342 67.8
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 5.2e-124 448.4 331 67.1
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 5.2e-124 448.4 342 64.9
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 5.2e-124 448.4 337 66.2
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 5.2e-124 448.4 315 69.2
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.8e-124 448.0 327 67.0
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 8.9e-124 447.6 331 67.1
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 8.9e-124 447.6 329 67.8
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 8.9e-124 447.6 330 67.0
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 8.9e-124 447.6 330 68.5
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.9e-124 447.6 315 69.2
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.2e-123 447.2 329 67.5
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.2e-123 447.2 330 68.2
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-123 447.2 331 66.8
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.2e-123 447.2 339 66.7
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.5e-123 446.8 344 65.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.5e-123 446.8 313 69.6
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.5e-123 446.8 337 66.5
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 2.0e-123 446.4 338 66.0
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 2.0e-123 446.4 331 66.8
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.0e-123 446.4 350 64.9
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.0e-123 446.4 329 67.5
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 2.0e-123 446.4 329 66.9
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.6e-123 446.0 345 66.4
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.6e-123 446.0 315 69.2
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.6e-123 446.0 315 69.2
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.6e-123 446.0 328 66.8
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.6e-123 446.0 330 68.2
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 3.4e-123 445.7 329 66.9
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 3.4e-123 445.7 347 64.8
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.4e-123 445.7 316 69.0
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 4.4e-123 445.3 329 66.6
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 5.8e-123 444.9 330 67.0
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 7.5e-123 444.5 329 66.9
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 7.5e-123 444.5 329 66.9
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 9.8e-123 444.1 343 65.3
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 9.8e-123 444.1 331 65.9
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 9.8e-123 444.1 331 65.9
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.3e-122 443.7 315 69.5
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.7e-122 443.4 318 67.9
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.7e-122 443.4 316 68.7
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 2.9e-122 442.6 324 68.5
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.7e-122 442.2 327 65.7
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 3.7e-122 442.2 332 67.5
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 8.3e-122 441.0 332 66.3
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 8.3e-122 441.0 355 62.3
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.9e-121 439.9 329 66.6
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 3.2e-121 439.1 313 68.4
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 9.2e-121 437.6 340 64.1
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.6e-120 436.8 331 65.0
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 2.7e-120 436.0 313 68.1
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 2.7e-120 436.0 329 66.6
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 3.5e-120 435.6 330 65.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 3.5e-120 435.6 330 65.5
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 6.0e-120 434.9 334 65.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.7e-119 433.3 331 64.4
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.3e-119 433.0 311 67.8
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 3.9e-119 432.2 331 64.0
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 8.6e-119 431.0 331 64.0
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 8.6e-119 431.0 331 63.7
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 8.6e-119 431.0 331 63.7
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.1e-118 430.6 331 64.0
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.5e-118 430.3 345 64.1
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.5e-118 430.3 318 66.4
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.9e-118 429.9 316 67.1
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 2.5e-118 429.5 331 63.4
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.5e-118 429.5 331 63.4
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.5e-118 429.5 331 63.4
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 3.3e-118 429.1 331 63.4
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 3.3e-118 429.1 331 63.4
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.3e-118 429.1 331 63.4
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 3.3e-118 429.1 331 63.4
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 3.3e-118 429.1 331 63.4
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 3.3e-118 429.1 331 63.4
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 3.3e-118 429.1 331 63.4
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.3e-118 429.1 369 60.7
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 7.3e-118 427.9 331 63.4
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 7.3e-118 427.9 331 63.1
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 9.5e-118 427.6 330 65.5
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 4.0e-116 422.2 394 57.6
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 5.2e-116 421.8 341 63.0
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.4e-113 413.7 315 62.9
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.4e-113 412.9 330 64.5
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 2.1e-112 409.8 293 68.6
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.3e-111 407.1 315 63.5
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 1.5e-107 393.7 330 61.2
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.1e-105 387.5 313 61.7
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.9e-105 386.7 244 77.0
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.6e-104 383.6 347 58.5
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 9.9e-99 364.4 261 68.2
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.2e-98 363.2 268 68.3
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 3.8e-98 362.5 317 58.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.1e-97 360.9 268 68.7
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.9e-97 360.1 266 66.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 1.0e-95 354.4 267 66.7
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 6.2e-93 345.1 277 63.5
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 9.9e-91 337.8 279 63.8
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.5e-86 323.2 315 55.6
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 5.9e-67 258.8 307 45.3
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.7e-66 257.3 189 66.1
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.2e-65 253.1 208 61.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.1e-64 250.4 167 71.9
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 4.3e-62 242.7 192 64.1
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 3.8e-58 229.6 304 44.7
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 9.7e-54 214.9 139 73.4
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 9.1e-52 208.4 206 58.7
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 6.1e-48 195.7 116 77.6
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.0e-47 194.9 126 69.8
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.0e-47 194.9 126 69.8
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-46 191.4 115 76.5
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 7.7e-43 178.7 115 73.0
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-38 164.9 119 66.4
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.3e-34 151.4 99 75.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 6.5e-34 149.1 193 50.3
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.6e-24 117.9 145 49.0
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.5e-22 111.3 241 35.7
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 2.2e-21 107.5 80 68.8
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 2.9e-18 97.1 76 65.8
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 2.1e-16 90.9 106 54.7
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 4.0e-15 86.7 59 71.2
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 4.0e-15 86.7 59 71.2
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 5.2e-15 86.3 46 84.8
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 2.6e-14 84.0 96 51.0
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.8e-14 82.0 90 48.9
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.4e-12 76.3 43 86.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 5.0e-10 69.7 46 71.7
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 5.8e-06 56.2 28 78.6


User provided reference genes

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