Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 2.0e-38 162.2 92 100.0
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 4.2e-33 144.4 92 87.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 7.2e-33 143.7 90 85.6
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.1e-32 142.1 90 85.6
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.5e-27 124.4 88 75.0
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 3.8e-26 121.3 88 71.6
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 5.0e-26 120.9 89 71.9
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.1e-25 119.8 89 71.9
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.5e-25 119.4 85 74.1
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.9e-25 119.0 85 74.1
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.5e-25 118.6 86 73.3
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 4.2e-25 117.9 88 71.6
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 5.5e-25 117.5 86 70.9
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 5.5e-25 117.5 85 71.8
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 5.5e-25 117.5 85 71.8
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 5.5e-25 117.5 85 71.8
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 7.2e-25 117.1 85 71.8
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 7.2e-25 117.1 85 70.6
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 7.2e-25 117.1 89 70.8
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 9.4e-25 116.7 86 73.3
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 9.4e-25 116.7 88 69.3
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 9.4e-25 116.7 88 69.3
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 2.1e-24 115.5 85 70.6
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.1e-24 115.5 86 70.9
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.7e-24 115.2 88 68.2
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.7e-24 115.2 87 67.8
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.7e-24 115.2 89 67.4
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.7e-24 115.2 88 68.2
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 2.7e-24 115.2 88 69.3
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 2.7e-24 115.2 86 69.8
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.7e-24 115.2 86 67.4
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 3.6e-24 114.8 86 68.6
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 3.6e-24 114.8 86 68.6
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.6e-24 114.8 86 68.6
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 4.7e-24 114.4 86 66.3
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 6.1e-24 114.0 86 68.6
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 6.1e-24 114.0 83 72.3
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 8.0e-24 113.6 85 68.2
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 8.0e-24 113.6 91 64.8
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.0e-23 113.2 95 66.3
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.0e-23 113.2 88 67.0
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.0e-23 113.2 88 68.2
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.4e-23 112.8 89 66.3
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-23 112.8 88 67.0
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.8e-23 112.5 88 67.0
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 2.3e-23 112.1 83 71.1
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.0e-23 111.7 91 67.0
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 3.0e-23 111.7 86 68.6
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.0e-23 111.3 88 67.0
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 5.2e-23 110.9 84 69.0
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 5.2e-23 110.9 86 65.1
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.2e-23 110.9 85 65.9
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 5.2e-23 110.9 91 67.0
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 1.2e-22 109.8 90 67.8
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.2e-22 109.8 85 64.7
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.2e-22 109.8 86 66.3
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 1.2e-22 109.8 89 69.7
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 1.2e-22 109.8 87 67.8
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.2e-22 109.8 89 65.2
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 2.0e-22 109.0 90 65.6
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 3.4e-22 108.2 90 63.3
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.4e-22 108.2 84 64.3
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 7.5e-22 107.1 87 60.9
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 9.8e-22 106.7 88 63.6
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.3e-21 106.3 84 64.3
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.7e-21 105.9 85 64.7
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 2.2e-21 105.5 88 59.1
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.8e-21 105.1 84 63.1
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 3.7e-21 104.8 86 62.8
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.8e-21 104.4 85 63.5
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 4.8e-21 104.4 88 61.4
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 4.8e-21 104.4 88 61.4
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 8.3e-21 103.6 88 60.2
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.1e-20 103.2 84 64.3
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 1.1e-20 103.2 85 61.2
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.4e-20 102.8 81 69.1
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.4e-20 102.8 81 67.9
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.8e-20 102.4 88 61.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.8e-20 102.4 89 58.4
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 2.4e-20 102.1 85 62.4
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.4e-20 102.1 85 62.4
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.4e-20 102.1 85 62.4
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 3.1e-20 101.7 86 59.3
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 5.4e-20 100.9 89 57.3
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.0e-20 100.5 86 58.1
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 9.1e-20 100.1 88 62.5
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.6e-19 99.4 88 56.8
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.6e-19 99.4 87 57.5
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.0e-19 99.0 88 59.1
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 7.7e-19 97.1 88 56.8
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 2.2e-18 95.5 80 65.0
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 2.9e-18 95.1 87 59.8
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.0e-18 94.4 82 62.2
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 1.5e-17 92.8 88 53.4
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.5e-17 92.8 90 53.3
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 5.5e-17 90.9 73 65.8
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 5.5e-17 90.9 85 56.5
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 5.5e-17 90.9 85 56.5
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 9.5e-17 90.1 69 63.8
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.1e-16 89.0 88 52.3
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 2.8e-16 88.6 86 55.8
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 6.1e-16 87.4 85 54.1
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-15 86.7 85 55.3
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 1.4e-15 86.3 85 54.1
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.8e-15 85.9 65 69.2
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-15 85.9 85 56.5
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.8e-15 85.9 85 56.5
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-15 85.1 85 52.9
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-15 85.1 85 52.9
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 3.0e-15 85.1 85 55.3
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 5.2e-15 84.3 83 55.4
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 6.8e-15 84.0 85 54.1
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 6.8e-15 84.0 86 53.5
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.8e-15 84.0 66 66.7
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 8.8e-15 83.6 84 54.8
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 8.8e-15 83.6 85 52.9
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 8.8e-15 83.6 85 52.9
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.2e-14 83.2 86 53.5
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-14 83.2 85 52.9
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.2e-14 83.2 86 52.3
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 1.2e-14 83.2 69 59.4
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.5e-14 82.8 85 52.9
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 2.0e-14 82.4 62 62.9
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 4.4e-14 81.3 85 51.8
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 5.7e-14 80.9 85 51.8
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 7.5e-14 80.5 85 50.6
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 9.8e-14 80.1 85 51.8
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 9.8e-14 80.1 85 51.8
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 9.8e-14 80.1 85 51.8
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.8e-13 78.6 85 52.9
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 3.7e-13 78.2 80 51.2
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.4e-12 76.3 83 45.8
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.8e-12 75.9 60 70.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.8e-12 75.9 88 50.0
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 3.1e-12 75.1 76 57.9
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.6e-11 72.8 80 50.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 2.0e-11 72.4 73 52.1
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 4.5e-11 71.2 60 61.7
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-10 70.1 76 52.6
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.0e-10 70.1 76 52.6
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 1.3e-10 69.7 76 52.6
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.3e-10 69.7 81 49.4
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 3.8e-10 68.2 81 49.4
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 6.6e-10 67.4 76 50.0
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 3.6e-08 61.6 59 57.6
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 4.7e-08 61.2 80 42.5
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 6.8e-07 57.4 85 44.7
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 4.4e-06 54.7 37 75.7


User provided reference genes

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