Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 4.1e-211 738.0 433 100.0
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.2e-164 582.8 446 79.8
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 8.2e-103 378.3 463 52.5
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 4.5e-101 372.5 464 51.1
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.7e-100 370.5 454 51.5
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.7e-100 370.5 417 54.7
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.9e-99 367.1 461 50.8
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 4.2e-99 365.9 457 50.5
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 4.2e-99 365.9 457 50.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 4.2e-99 365.9 454 51.3
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.2e-98 364.4 459 51.6
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 4.6e-98 362.5 259 89.6
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 6.1e-98 362.1 458 51.3
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.8e-97 360.5 455 49.9
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.3e-97 360.1 456 50.4
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 6.7e-97 358.6 465 51.0
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 7.4e-96 355.1 430 53.3
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 9.7e-96 354.8 477 48.4
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 2.2e-95 353.6 459 49.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 6.3e-95 352.1 465 50.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 8.2e-95 351.7 462 49.6
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.4e-94 350.9 452 49.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.4e-94 350.9 453 50.1
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.8e-94 350.5 462 50.0
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 4.1e-94 349.4 456 49.1
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 4.1e-94 349.4 449 50.3
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 5.3e-94 349.0 462 47.6
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 5.3e-94 349.0 463 50.5
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 9.1e-94 348.2 443 49.4
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.2e-93 347.8 449 50.8
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.5e-93 347.4 458 50.0
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.0e-93 347.1 454 48.7
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 7.7e-93 345.1 461 48.8
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.0e-92 344.7 458 50.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.0e-92 344.7 453 50.1
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.3e-92 344.4 457 49.2
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.3e-92 344.4 468 50.2
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.9e-92 343.2 431 51.0
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.5e-92 341.7 456 48.2
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 8.5e-92 341.7 454 48.5
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.4e-91 340.9 456 47.1
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 2.5e-91 340.1 455 49.0
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 3.2e-91 339.7 433 50.3
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 3.2e-91 339.7 461 49.7
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 4.2e-91 339.3 454 48.2
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.2e-91 339.3 456 47.8
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.2e-91 339.3 456 48.2
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 4.2e-91 339.3 471 47.6
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 5.5e-91 339.0 456 47.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 7.2e-91 338.6 465 49.2
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 7.2e-91 338.6 462 47.6
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 9.4e-91 338.2 462 48.1
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.2e-90 337.8 449 47.2
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 4.7e-90 335.9 455 47.0
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 7.9e-90 335.1 453 46.8
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-89 334.7 454 48.2
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.0e-89 334.7 456 48.2
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.3e-89 333.6 446 49.1
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.3e-89 333.6 446 49.1
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 2.3e-89 333.6 456 46.7
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 5.1e-89 332.4 441 50.1
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 6.7e-89 332.0 450 47.3
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 8.8e-89 331.6 384 52.1
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 8.8e-89 331.6 459 46.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 8.8e-89 331.6 449 49.0
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 8.8e-89 331.6 456 50.7
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.1e-88 331.3 463 47.9
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.5e-88 330.9 456 46.5
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 1.5e-88 330.9 456 48.2
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 3.3e-88 329.7 454 47.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 4.4e-88 329.3 460 47.6
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 5.7e-88 328.9 451 48.3
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 7.4e-88 328.6 453 46.6
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 7.4e-88 328.6 455 47.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.3e-87 327.8 447 47.0
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.2e-87 327.0 445 48.5
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.2e-87 327.0 445 48.5
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.2e-87 327.0 464 47.8
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.8e-87 326.6 451 48.3
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 8.2e-87 325.1 478 46.0
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 1.1e-86 324.7 464 48.3
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-86 323.6 455 49.7
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 3.1e-86 323.2 451 47.2
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.1e-86 322.8 466 47.0
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.5e-85 319.7 456 46.5
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.5e-85 319.3 456 46.9
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 7.7e-85 318.5 454 46.9
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.0e-84 318.2 457 48.1
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.7e-84 317.4 457 47.7
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 3.2e-83 313.2 495 44.8
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.8e-81 307.4 453 46.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 3.0e-81 306.6 408 49.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 5.2e-81 305.8 454 47.1
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.5e-80 304.3 424 46.9
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 3.5e-77 293.1 454 44.7
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.3e-76 291.2 462 45.9
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 5.0e-76 289.3 413 46.7
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.9e-75 287.3 458 44.5
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.7e-74 283.5 398 47.2
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 8.8e-73 278.5 493 42.4
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 2.0e-72 277.3 373 50.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.0e-72 277.3 437 46.2
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-69 268.1 338 50.9
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.0e-68 265.0 470 41.1
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 5.7e-64 249.2 395 42.5
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.8e-64 248.4 365 46.8
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.8e-63 246.9 404 43.3
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 8.6e-60 235.3 452 38.7
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.7e-55 221.1 276 49.6
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.3e-55 218.8 255 53.3
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 4.6e-53 213.0 292 46.2
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.3e-52 211.5 385 39.5
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.8e-49 201.1 473 36.6
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.4e-48 196.8 277 48.4
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 8.3e-47 192.2 277 47.3
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.0e-44 185.3 192 56.8
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.3e-44 184.9 358 37.2
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-43 181.8 371 38.5
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.6e-42 177.9 372 36.0
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.7e-42 176.4 198 54.0
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.3e-41 174.1 453 34.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.2e-34 151.8 254 42.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 8.9e-33 145.6 149 57.0
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.4e-32 143.7 432 31.9
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.9e-32 142.1 197 46.2
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.5e-29 133.7 190 46.8
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 6.0e-29 132.9 176 48.9
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-26 125.2 122 59.8
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 6.8e-25 119.4 161 47.8
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.4e-23 112.8 172 43.6
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 2.5e-19 100.9 249 35.3
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 5.4e-14 83.2 189 37.0
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.0e-12 79.0 134 41.0
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 5.1e-12 76.6 68 58.8
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.5e-11 74.3 100 47.0
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 5.6e-11 73.2 122 45.1
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.1e-10 69.3 62 58.1
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.9e-07 60.8 203 31.0
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 8.4e-07 59.3 192 28.1
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 3.2e-06 57.4 114 36.8
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 4.2e-06 57.0 37 75.7


User provided reference genes

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