Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 4.9e-126 454.5 235 100.0
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 4.3e-82 308.5 239 68.2
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 4.7e-44 182.2 195 48.7
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 6.1e-44 181.8 208 46.2
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 4.4e-42 175.6 197 43.7
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 5.7e-42 175.3 204 42.6
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 1.3e-41 174.1 189 44.4
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 2.8e-41 172.9 206 43.2
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 1.1e-40 171.0 204 41.7
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 1.1e-40 171.0 208 43.3
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 1.4e-40 170.6 188 44.1
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 3.1e-40 169.5 197 44.2
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.0e-39 166.8 219 40.2
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.0e-39 166.8 219 40.2
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 2.9e-38 162.9 186 44.6
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 8.5e-38 161.4 191 41.4
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 1.1e-37 161.0 188 43.6
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 1.5e-37 160.6 190 42.6
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 2.5e-37 159.8 184 42.4
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 4.2e-37 159.1 185 42.2
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 5.5e-37 158.7 233 38.2
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 7.2e-37 158.3 207 42.5
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 1.2e-36 157.5 225 40.4
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 3.6e-36 156.0 239 36.8
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 6.1e-36 155.2 206 40.8
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 8.0e-36 154.8 196 39.8
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 8.0e-36 154.8 234 36.3
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 1.4e-35 154.1 203 38.9
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 2.3e-35 153.3 205 38.0
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 4.0e-35 152.5 234 37.6
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 6.8e-35 151.8 236 35.2
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 6.8e-35 151.8 184 40.2
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 6.8e-35 151.8 191 41.4
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 8.8e-35 151.4 205 40.5
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 8.8e-35 151.4 176 42.0
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 2.0e-34 150.2 208 38.5
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 2.0e-34 150.2 191 40.3
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 2.0e-34 150.2 186 37.6
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 3.4e-34 149.4 188 39.9
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 5.7e-34 148.7 206 37.4
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 7.5e-34 148.3 185 42.2
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 9.8e-34 147.9 204 39.7
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 1.3e-33 147.5 176 41.5
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.3e-33 147.5 299 32.1
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 1.3e-33 147.5 181 41.4
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 2.8e-33 146.4 204 37.7
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 2.8e-33 146.4 191 39.3
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 3.7e-33 146.0 207 37.7
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 4.8e-33 145.6 220 35.9
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 6.3e-33 145.2 185 40.0
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 6.3e-33 145.2 219 37.0
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 6.3e-33 145.2 232 35.8
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 1.1e-32 144.4 185 40.0
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 1.6e-31 140.6 202 35.1
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 2.0e-31 140.2 211 36.0
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 2.0e-31 140.2 207 38.6
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 3.5e-31 139.4 206 38.8
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 7.7e-31 138.3 202 35.1
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 7.7e-31 138.3 202 35.1
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 1.0e-30 137.9 177 38.4
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 1.3e-30 137.5 186 38.2
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 1.3e-30 137.5 179 40.2
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 2.2e-30 136.7 207 38.2
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 2.9e-30 136.3 179 39.1
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 2.9e-30 136.3 161 41.6
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 2.9e-30 136.3 239 34.3
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.5e-29 134.0 161 41.0
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 1.9e-29 133.7 221 35.3
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 1.9e-29 133.7 179 38.5
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 1.9e-29 133.7 230 35.7
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 2.5e-29 133.3 173 40.5
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 3.2e-29 132.9 161 40.4
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 4.2e-29 132.5 161 40.4
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 9.5e-29 131.3 186 36.6
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 2.1e-28 130.2 185 36.8
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 2.1e-28 130.2 215 37.2
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.7e-28 129.8 161 39.8
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 4.7e-28 129.0 173 39.3
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 6.1e-28 128.6 201 35.8
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 1.4e-27 127.5 202 37.1
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 1.8e-27 127.1 172 38.4
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 1.8e-27 127.1 182 35.7
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 2.3e-27 126.7 187 35.8
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 5.2e-27 125.6 187 35.8
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 1.2e-26 124.4 200 34.5
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 3.4e-26 122.9 181 35.4
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 5.7e-26 122.1 186 37.1
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 1.7e-25 120.6 182 37.4
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 2.2e-25 120.2 158 39.9
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 1.6e-23 114.0 122 44.3
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.6e-20 104.0 203 33.5
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 8.9e-19 98.2 121 43.0
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 8.6e-14 81.6 82 46.3
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 2.8e-12 76.6 78 44.9
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 6.2e-12 75.5 61 54.1
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 1.8e-11 73.9 160 35.0
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 2.3e-11 73.6 78 42.3
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 8.9e-11 71.6 140 32.9
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 1.2e-10 71.2 130 32.3
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 5.8e-10 68.9 80 37.5
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 2.2e-09 67.0 62 40.3
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 2.2e-09 67.0 176 29.0
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 2.0e-07 60.5 112 33.0


User provided reference genes

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