Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 9.5e-136 486.9 252 100.0
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.4e-99 366.7 207 88.9
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.4e-86 322.8 254 68.5
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.7e-71 273.5 231 60.2
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.9e-70 268.1 222 59.9
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.5e-69 266.9 219 62.6
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.6e-69 266.2 266 54.1
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 7.7e-69 264.6 266 53.8
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.2e-68 263.1 244 56.1
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 5.0e-68 261.9 231 60.2
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 6.5e-68 261.5 207 64.3
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 6.5e-68 261.5 256 55.9
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.9e-67 260.0 247 56.7
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 7.2e-67 258.1 236 58.1
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 9.4e-67 257.7 235 56.2
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 3.6e-66 255.8 219 58.0
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 4.7e-66 255.4 235 56.6
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 6.1e-66 255.0 256 53.5
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 7.9e-66 254.6 248 54.4
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.0e-65 254.2 248 55.2
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.4e-65 253.8 262 53.8
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.4e-65 253.8 206 60.7
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.8e-65 253.4 200 63.5
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.8e-65 253.4 222 59.5
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.1e-65 251.9 232 55.2
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 6.7e-65 251.5 256 53.5
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 6.7e-65 251.5 201 64.2
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 8.8e-65 251.1 236 55.5
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 2.6e-64 249.6 206 59.2
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 2.6e-64 249.6 235 55.3
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 3.3e-64 249.2 226 57.5
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.7e-64 248.4 217 59.4
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 9.7e-64 247.7 222 56.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 2.8e-63 246.1 232 57.8
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 3.7e-63 245.7 206 60.2
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 3.7e-63 245.7 206 59.7
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 4.8e-63 245.4 247 52.6
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-62 244.2 206 60.2
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.4e-62 243.8 208 59.1
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 4.1e-62 242.3 214 58.9
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-61 240.7 201 58.7
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.2e-61 240.7 231 53.2
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.5e-61 240.4 261 51.3
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.6e-61 239.6 206 56.8
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 4.5e-61 238.8 201 58.2
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.5e-61 238.8 228 54.8
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.9e-61 238.4 217 58.1
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 7.7e-61 238.0 255 51.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 1.7e-60 236.9 205 58.5
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 3.8e-60 235.7 236 52.1
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 8.5e-60 234.6 218 55.5
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 8.5e-60 234.6 249 51.4
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.4e-59 233.8 255 51.4
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.4e-59 233.8 233 52.4
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 1.9e-59 233.4 229 56.8
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 5.5e-59 231.9 234 53.0
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 5.5e-59 231.9 203 55.7
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.2e-58 230.7 206 56.3
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.6e-58 230.3 225 53.8
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.1e-58 229.9 220 54.1
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 2.7e-58 229.6 206 55.8
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 6.1e-58 228.4 227 53.3
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 8.0e-58 228.0 206 55.3
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 1.8e-57 226.9 248 50.8
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.3e-57 226.5 246 50.8
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.1e-56 224.2 206 53.9
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.5e-56 223.8 223 53.8
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.5e-56 223.8 219 55.3
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 4.4e-56 222.2 210 54.8
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 5.7e-56 221.9 222 52.3
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.7e-55 220.3 215 54.0
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.7e-55 219.2 236 53.0
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 4.8e-55 218.8 234 51.7
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 6.3e-55 218.4 231 51.9
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 8.2e-55 218.0 250 50.0
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.4e-54 217.2 195 56.4
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.2e-53 214.2 201 51.7
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 2.0e-53 213.4 221 52.5
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.0e-52 211.1 205 52.7
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 3.8e-52 209.1 234 49.6
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 3.8e-52 209.1 206 51.5
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.1e-51 207.6 246 48.0
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 7.2e-51 204.9 233 49.4
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.4e-51 204.5 222 49.5
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.4e-51 204.5 222 49.5
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.2e-50 204.1 201 52.2
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.0e-49 201.1 206 50.0
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 5.2e-49 198.7 209 50.7
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 8.8e-49 198.0 222 48.2
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 8.8e-49 198.0 222 48.2
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.2e-48 197.6 247 47.8
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.5e-48 197.2 255 45.1
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 4.4e-48 195.7 176 54.0
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 4.4e-48 195.7 206 49.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 5.7e-48 195.3 202 51.5
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 9.7e-48 194.5 249 45.8
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.3e-47 194.1 206 48.5
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 2.2e-47 193.4 242 45.9
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.2e-47 193.4 261 44.8
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.8e-47 193.0 234 48.3
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 4.8e-47 192.2 267 41.9
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.4e-46 190.7 239 45.2
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.4e-46 190.7 174 54.0
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.8e-46 190.3 240 45.4
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 2.4e-46 189.9 215 47.9
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 5.3e-46 188.7 239 44.8
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 5.3e-46 188.7 178 52.8
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 7.0e-46 188.3 239 45.2
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 7.0e-46 188.3 238 45.0
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.0e-46 188.3 247 46.2
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 7.0e-46 188.3 247 46.2
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.2e-45 187.6 213 48.4
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.6e-45 187.2 234 46.2
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.5e-45 186.0 213 47.9
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.5e-45 186.0 159 59.1
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 5.9e-45 185.3 206 47.6
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 7.7e-45 184.9 206 48.5
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.7e-44 183.7 199 50.3
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.9e-43 180.3 210 44.8
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 5.5e-43 178.7 206 47.1
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.4e-43 177.9 210 47.1
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.6e-42 177.2 180 50.6
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.6e-42 176.0 210 46.7
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.6e-42 176.0 210 46.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 8.0e-42 174.9 232 44.0
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 3.4e-40 169.5 188 50.5
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.4e-40 169.5 217 45.6
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.4e-40 169.5 217 45.6
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 5.7e-40 168.7 206 44.7
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.3e-39 167.5 180 48.9
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 8.3e-39 164.9 256 42.2
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-38 164.1 178 47.2
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 2.4e-38 163.3 152 57.2
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.6e-37 160.6 233 41.6
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 7.7e-37 158.3 240 40.0
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-36 157.9 201 43.3
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-36 157.9 201 43.3
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.0e-36 157.9 196 42.3
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 8.6e-36 154.8 137 59.1
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 4.2e-35 152.5 200 44.0
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.0e-33 147.9 198 40.9
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 6.8e-33 145.2 226 41.2
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.0e-32 143.7 221 38.9
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 8.3e-31 138.3 193 39.9
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 8.3e-31 138.3 215 40.5
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.1e-30 137.9 225 38.7
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.1e-30 137.9 193 39.9
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.4e-30 137.5 193 39.4
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 7.0e-30 135.2 208 37.5
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 9.2e-30 134.8 193 41.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.2e-29 134.4 129 54.3
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.2e-29 134.4 205 38.0
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.0e-29 133.7 184 39.1
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 2.5e-27 126.7 207 41.1
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 9.5e-27 124.8 120 55.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.6e-26 122.9 153 41.2
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.9e-23 112.5 196 34.7
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.3e-20 104.4 161 35.4
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.3e-19 99.4 161 34.8
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.6e-18 97.4 209 35.4
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.6e-13 80.9 94 42.6
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 7.8e-13 78.6 90 47.8
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.7e-12 77.4 81 48.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.5e-11 73.6 74 52.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 4.7e-10 69.3 156 29.5
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.1e-09 66.6 68 54.4
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 4.4e-08 62.8 76 43.4
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-07 61.2 63 46.0


User provided reference genes

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