Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 4.1e-72 274.6 140 100.0
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 9.5e-53 210.3 112 94.6
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 8.1e-52 207.2 112 93.8
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.9e-40 169.5 112 76.8
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 2.5e-37 159.1 112 74.1
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 5.6e-37 157.9 112 74.1
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 5.6e-37 157.9 91 82.4
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 5.6e-37 157.9 112 75.0
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.6e-37 157.9 91 82.4
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 9.6e-37 157.1 91 83.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.3e-36 156.8 91 83.5
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.3e-36 156.8 125 66.4
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.6e-36 156.4 91 83.5
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.6e-36 156.4 112 73.2
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.6e-36 156.4 125 65.6
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.6e-36 156.4 92 81.5
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.6e-36 156.4 91 83.5
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.1e-36 156.0 91 83.5
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.8e-36 155.6 91 82.4
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.8e-36 155.6 124 67.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.8e-36 155.6 91 82.4
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.8e-36 155.6 91 81.3
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.8e-36 155.6 125 66.4
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.8e-36 155.6 106 75.5
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 3.6e-36 155.2 107 74.8
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 4.8e-36 154.8 125 64.0
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 4.8e-36 154.8 91 80.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 4.8e-36 154.8 91 81.3
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 4.8e-36 154.8 112 71.4
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.8e-36 154.8 91 81.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 4.8e-36 154.8 112 71.4
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 4.8e-36 154.8 91 81.3
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 4.8e-36 154.8 112 69.6
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 6.2e-36 154.5 112 71.4
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 6.2e-36 154.5 91 80.2
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 8.1e-36 154.1 112 70.5
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.1e-36 154.1 91 79.1
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.1e-36 154.1 112 73.2
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 8.1e-36 154.1 112 71.4
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-35 153.7 91 81.3
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.1e-35 153.7 91 80.2
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.1e-35 153.7 91 80.2
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.1e-35 153.7 112 70.5
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-35 153.7 91 80.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.1e-35 153.7 112 70.5
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.1e-35 153.7 112 70.5
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.1e-35 153.7 112 72.3
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.1e-35 153.7 112 68.8
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.1e-35 153.7 91 78.0
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.4e-35 153.3 90 80.0
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.4e-35 153.3 90 80.0
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.4e-35 153.3 90 80.0
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.4e-35 153.3 112 70.5
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.4e-35 153.3 104 71.2
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.4e-35 153.3 112 70.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.8e-35 152.9 112 71.4
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.8e-35 152.9 91 81.3
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.4e-35 152.5 91 79.1
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.4e-35 152.5 125 64.8
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.4e-35 152.5 91 79.1
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.4e-35 152.5 112 70.5
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.4e-35 152.5 124 64.5
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.1e-35 152.1 125 64.0
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 3.1e-35 152.1 91 76.9
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.1e-35 152.1 112 70.5
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.0e-35 151.8 91 79.1
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.0e-35 151.8 112 69.6
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 6.9e-35 151.0 112 68.8
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 9.0e-35 150.6 91 79.1
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.0e-35 150.6 90 78.9
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 9.0e-35 150.6 112 70.5
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 9.0e-35 150.6 112 70.5
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.2e-34 150.2 91 80.2
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-34 150.2 112 69.6
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.2e-34 150.2 104 69.2
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.2e-34 150.2 91 79.1
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.5e-34 149.8 91 78.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-34 149.4 91 78.0
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-34 149.4 91 78.0
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 2.0e-34 149.4 91 78.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.0e-34 149.4 91 78.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.6e-34 149.1 91 79.1
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.4e-34 148.7 112 71.4
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 4.5e-34 148.3 112 70.5
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 4.5e-34 148.3 112 70.5
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 4.5e-34 148.3 112 70.5
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.5e-34 148.3 112 70.5
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.5e-34 148.3 112 69.6
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.8e-34 147.9 124 63.7
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 75.8
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 78.0
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 78.0
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 78.0
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 78.0
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 78.0
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 78.0
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 76.9
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 5.8e-34 147.9 112 67.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 75.8
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 78.0
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 76.9
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.8e-34 147.9 91 75.8
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 7.6e-34 147.5 91 76.9
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 7.6e-34 147.5 91 76.9
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 7.6e-34 147.5 112 69.6
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 7.6e-34 147.5 91 78.0
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 9.9e-34 147.1 112 69.6
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.9e-34 147.1 91 78.0
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.9e-34 147.1 91 78.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 9.9e-34 147.1 112 69.6
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 9.9e-34 147.1 112 67.0
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 9.9e-34 147.1 112 71.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.3e-33 146.7 112 69.6
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-33 146.7 112 69.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-33 146.7 112 69.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-33 146.7 112 69.6
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.3e-33 146.7 112 69.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.7e-33 146.4 125 63.2
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 3.8e-33 145.2 112 69.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 3.8e-33 145.2 112 69.6
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.8e-33 145.2 125 63.2
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 3.8e-33 145.2 125 64.0
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 4.9e-33 144.8 91 75.8
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 4.9e-33 144.8 125 64.0
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 6.4e-33 144.4 112 67.9
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 6.4e-33 144.4 125 64.0
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 8.4e-33 144.1 112 68.8
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 8.4e-33 144.1 112 69.6
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 8.4e-33 144.1 112 67.0
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 8.4e-33 144.1 112 68.8
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.9e-32 142.9 112 67.9
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.9e-32 142.9 112 68.8
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 2.4e-32 142.5 125 63.2
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.4e-32 142.5 125 63.2
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 9.3e-32 140.6 125 62.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.6e-31 139.8 91 72.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.6e-31 139.8 91 72.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.9e-29 132.9 111 63.1
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-28 129.8 112 64.3
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.6e-28 129.8 112 64.3
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.4e-27 125.9 114 59.6
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.5e-26 123.2 81 69.1
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.5e-26 123.2 111 60.4
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 4.5e-26 121.7 90 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 7.6e-26 120.9 111 58.6
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.9e-26 120.6 111 55.9
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.7e-25 119.8 91 67.0
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.2e-25 119.4 90 66.7
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 4.9e-25 118.2 94 67.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.4e-24 116.7 96 65.6
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.2e-24 115.5 91 59.3
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 9.3e-24 114.0 90 57.8
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 7.9e-23 110.9 63 82.5
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.0e-22 110.5 65 80.0
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.1e-22 108.2 112 57.1
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.9e-21 106.3 87 63.2
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.3e-21 105.1 86 66.3
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.4e-21 104.4 111 52.3
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.1e-20 102.8 66 72.7
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 7.6e-18 94.4 64 67.2
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.1e-14 81.6 65 61.5
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.3e-13 79.0 65 55.4
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.7e-13 78.2 71 50.7
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.7e-13 78.2 71 50.7
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.6e-13 77.4 73 46.6
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.6e-12 76.6 90 44.4
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.6e-12 76.6 90 44.4
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.8e-12 75.9 100 41.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 7.6e-10 67.8 94 36.2
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.0e-06 57.4 40 62.5


User provided reference genes

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