Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 8.8e-40 166.4 78 100.0
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 9.8e-15 83.2 53 71.7
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 9.8e-15 83.2 53 71.7
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 6.3e-14 80.5 52 73.1
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 2.4e-13 78.6 54 66.7
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 7.0e-13 77.0 50 68.0
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 2.0e-12 75.5 53 62.3
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 3.5e-12 74.7 53 64.2
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 3.5e-12 74.7 48 70.8
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 4.6e-12 74.3 53 66.0
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 4.6e-12 74.3 54 61.1
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 4.6e-12 74.3 54 61.1
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 4.6e-12 74.3 53 66.0
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 5.9e-12 73.9 53 64.2
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 5.9e-12 73.9 52 63.5
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 5.9e-12 73.9 52 63.5
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 5.9e-12 73.9 52 63.5
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 5.9e-12 73.9 52 63.5
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.9e-12 73.9 53 64.2
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.9e-12 73.9 53 64.2
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.9e-12 73.9 53 64.2
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 5.9e-12 73.9 53 64.2
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 5.9e-12 73.9 53 64.2
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 5.9e-12 73.9 53 62.3
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 7.8e-12 73.6 53 64.2
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 7.8e-12 73.6 53 64.2
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 1.0e-11 73.2 48 64.6
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 1.0e-11 73.2 53 60.4
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 1.3e-11 72.8 48 66.7
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 1.3e-11 72.8 53 64.2
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.3e-11 72.8 53 64.2
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 1.3e-11 72.8 53 60.4
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 1.3e-11 72.8 52 61.5
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.3e-11 72.8 52 61.5
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 1.7e-11 72.4 48 66.7
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 2.3e-11 72.0 47 66.0
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 2.3e-11 72.0 48 64.6
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 2.3e-11 72.0 53 62.3
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.3e-11 72.0 53 58.5
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 2.9e-11 71.6 53 62.3
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 2.9e-11 71.6 53 60.4
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 60.4
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 60.4
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 3.9e-11 71.2 56 57.1
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 58.5
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 60.4
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 60.4
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 3.9e-11 71.2 48 66.7
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 62.3
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 60.4
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 62.3
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 3.9e-11 71.2 48 64.6
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 60.4
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 3.9e-11 71.2 53 60.4
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 3.9e-11 71.2 48 64.6
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 3.9e-11 71.2 48 62.5
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 5.0e-11 70.9 53 60.4
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 5.0e-11 70.9 53 60.4
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 5.0e-11 70.9 47 66.0
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 5.0e-11 70.9 53 56.6
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 5.0e-11 70.9 53 56.6
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 5.0e-11 70.9 48 64.6
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 5.0e-11 70.9 47 63.8
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 5.0e-11 70.9 53 62.3
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 5.0e-11 70.9 47 57.4
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.6e-11 70.5 53 60.4
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 6.6e-11 70.5 53 60.4
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 6.6e-11 70.5 48 64.6
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 6.6e-11 70.5 54 55.6
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 6.6e-11 70.5 48 62.5
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 6.6e-11 70.5 53 56.6
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 6.6e-11 70.5 53 60.4
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 6.6e-11 70.5 48 64.6
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 8.6e-11 70.1 47 61.7
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 8.6e-11 70.1 55 54.5
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.6e-11 70.1 51 58.8
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.6e-11 70.1 48 62.5
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 8.6e-11 70.1 53 60.4
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 8.6e-11 70.1 52 61.5
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 8.6e-11 70.1 53 58.5
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 8.6e-11 70.1 53 58.5
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-10 69.7 53 60.4
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 1.1e-10 69.7 53 56.6
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 1.1e-10 69.7 53 56.6
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 1.1e-10 69.7 55 58.2
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 1.1e-10 69.7 47 63.8
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 1.1e-10 69.7 53 56.6
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 1.5e-10 69.3 53 58.5
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 1.5e-10 69.3 53 58.5
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 1.5e-10 69.3 53 58.5
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 1.5e-10 69.3 53 58.5
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 1.5e-10 69.3 47 63.8
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.5e-10 69.3 53 54.7
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 1.5e-10 69.3 53 58.5
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.9e-10 68.9 53 58.5
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 1.9e-10 68.9 54 61.1
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 2.5e-10 68.6 48 62.5
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 2.5e-10 68.6 53 56.6
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 2.5e-10 68.6 53 56.6
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.5e-10 68.6 52 55.8
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.5e-10 68.6 52 55.8
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 2.5e-10 68.6 55 56.4
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 2.5e-10 68.6 53 58.5
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 2.5e-10 68.6 48 58.3
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 2.5e-10 68.6 53 54.7
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 2.5e-10 68.6 53 58.5
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 2.5e-10 68.6 53 56.6
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 2.5e-10 68.6 52 59.6
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 3.3e-10 68.2 53 56.6
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 3.3e-10 68.2 48 60.4
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 3.3e-10 68.2 48 60.4
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 3.3e-10 68.2 48 56.2
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 3.3e-10 68.2 47 61.7
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 4.3e-10 67.8 61 55.7
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 4.3e-10 67.8 53 54.7
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 4.3e-10 67.8 53 56.6
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 4.3e-10 67.8 47 61.7
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 4.3e-10 67.8 47 61.7
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 4.3e-10 67.8 53 56.6
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 5.6e-10 67.4 53 58.5
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 5.6e-10 67.4 47 61.7
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 5.6e-10 67.4 53 58.5
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 5.6e-10 67.4 53 58.5
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 5.6e-10 67.4 53 56.6
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 5.6e-10 67.4 47 59.6
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 5.6e-10 67.4 53 54.7
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 5.6e-10 67.4 53 54.7
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 7.3e-10 67.0 47 61.7
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 7.3e-10 67.0 53 56.6
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 7.3e-10 67.0 53 52.8
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 7.3e-10 67.0 53 54.7
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 9.5e-10 66.6 53 54.7
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.2e-09 66.2 57 54.4
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 1.2e-09 66.2 47 61.7
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 1.6e-09 65.9 47 61.7
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 2.1e-09 65.5 47 61.7
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 2.1e-09 65.5 47 61.7
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 2.1e-09 65.5 53 54.7
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 2.1e-09 65.5 70 45.7
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 2.8e-09 65.1 47 59.6
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 2.8e-09 65.1 47 59.6
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 2.8e-09 65.1 47 59.6
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 2.8e-09 65.1 54 50.0
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 2.8e-09 65.1 47 57.4
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 2.8e-09 65.1 52 53.8
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 2.8e-09 65.1 52 53.8
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 2.8e-09 65.1 53 54.7
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 2.8e-09 65.1 53 54.7
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 2.8e-09 65.1 53 54.7
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 3.6e-09 64.7 46 60.9
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 6.2e-09 63.9 57 50.9
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 6.2e-09 63.9 48 58.3
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 8.0e-09 63.5 70 48.6
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 1.0e-08 63.2 48 54.2
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 1.0e-08 63.2 47 61.7
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.8e-08 62.4 47 57.4
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 5.2e-08 60.8 58 55.2
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 6.8e-08 60.5 48 58.3
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 8.9e-08 60.1 38 71.1
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.5e-07 59.3 47 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.5e-07 59.3 47 48.9
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 3.4e-07 58.2 47 48.9
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 6.4e-06 53.9 63 46.0


User provided reference genes

Program Settings