Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 3.6e-124 448.4 244 100.0
Zm00001eb272130 Zea mays HOM05D004657 ORTHO05D005562 8.8e-46 188.0 131 84.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.7e-41 173.7 141 76.6
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 4.0e-38 162.5 146 70.5
Zm00001eb410580 Zea mays HOM05D004657 ORTHO05D005562 2.3e-30 136.7 101 86.1
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.2e-29 134.4 96 78.1
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.7e-28 130.6 106 75.5
Zm00001eb017260 Zea mays HOM05D002775 ORTHO05D003262 1.9e-24 117.1 59 96.6
Manes.08G058400 Manihot esculenta HOM05D002775 ORTHO05D003262 3.1e-22 109.8 58 91.4
Migut.J01666 Erythranthe guttata HOM05D002775 ORTHO05D003262 6.8e-22 108.6 58 91.4
SalBow6G1070 Salvia bowleyana HOM05D002775 ORTHO05D003262 2.0e-21 107.1 58 87.9
MSTRG.6374 Avicennia marina HOM05D002775 ORTHO05D003262 5.8e-21 105.5 58 87.9
Lj1g0020632 Lotus japonicus HOM05D002775 ORTHO05D003262 5.8e-21 105.5 59 86.4
TAR636G1121 Trochodendron aralioides HOM05D002775 ORTHO05D003262 5.8e-21 105.5 58 87.9
Hund24623 Selenicereus undatus HOM05D002775 ORTHO05D003262 7.5e-21 105.1 59 84.7
Manes.09G006500 Manihot esculenta HOM05D002775 ORTHO05D003262 9.8e-21 104.8 58 89.7
Os07g0659400 Oryza sativa ssp. japonica HOM05D002775 ORTHO05D003262 9.8e-21 104.8 58 87.9
Zm00001eb110760 Zea mays HOM05D002775 ORTHO05D003262 9.8e-21 104.8 58 89.7
Dinv34372 Davidia involucrata HOM05D002775 ORTHO05D003262 1.3e-20 104.4 58 87.9
SGA_v2.0_scaffold105G30299 Striga asiatica HOM05D000302 ORTHO05D000334 1.3e-20 104.4 58 86.2
Potri.006G040800 Populus trichocarpa HOM05D002775 ORTHO05D003262 1.7e-20 104.0 58 86.2
PGR031G2172 Punica granatum HOM05D002775 ORTHO05D003262 1.7e-20 104.0 59 83.1
CiPaw.10G039500 Carya illinoinensis HOM05D002775 ORTHO05D003262 2.2e-20 103.6 58 86.2
Hma1.2p1_0553F.1_g177770 Hydrangea macrophylla HOM05D002775 ORTHO05D003262 2.2e-20 103.6 58 84.5
Lsat_1_v5_gn_9_29601 Lactuca sativa HOM05D002775 ORTHO05D003262 2.2e-20 103.6 58 84.5
Zm00001eb329780 Zea mays HOM05D002775 ORTHO05D003262 2.2e-20 103.6 58 86.2
EL10Ac3g07198 Beta vulgaris HOM05D002775 ORTHO05D003262 2.9e-20 103.2 59 83.1
Oeu059333.1 Olea europaea HOM05D002775 ORTHO05D003262 2.9e-20 103.2 58 86.2
Prupe.7G041200 Prunus persica HOM05D002775 ORTHO05D003262 2.9e-20 103.2 58 86.2
QL03p064981 Quercus lobata HOM05D002775 ORTHO05D003262 2.9e-20 103.2 58 84.5
QL04p066053 Quercus lobata HOM05D000176 ORTHO05D000106 2.9e-20 103.2 58 84.5
QL07p009774 Quercus lobata HOM05D002775 ORTHO05D003262 2.9e-20 103.2 58 84.5
QL93p0200_0009 Quercus lobata HOM05D002775 ORTHO05D003262 2.9e-20 103.2 58 84.5
QL93p2009_0008 Quercus lobata HOM05D002775 ORTHO05D003262 2.9e-20 103.2 58 84.5
Actinidia09266 Actinidia chinensis HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 86.2
Actinidia17943 Actinidia chinensis HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 86.2
ClCG10G016140 Citrullus lanatus HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 86.2
Ciclev10005563m.g Citrus clementina HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 84.5
Potri.016G037600 Populus trichocarpa HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 84.5
Rhsim03G0040300 Rhododendron simsii HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 86.2
Sed0003281 Sechium edule HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 84.5
Thecc.05G137200 Theobroma cacao HOM05D002775 ORTHO05D003262 3.7e-20 102.8 58 84.5
Cc06_g18960 Coffea canephora HOM05D002775 ORTHO05D003262 4.9e-20 102.4 59 83.1
MELO3C009765.2 Cucumis melo HOM05D002775 ORTHO05D003262 4.9e-20 102.4 58 84.5
Sed0003461 Sechium edule HOM05D002775 ORTHO05D003262 4.9e-20 102.4 58 84.5
FvH4_6g25490 Fragaria vesca HOM05D002775 ORTHO05D003262 6.4e-20 102.1 58 86.2
Lalb_Chr25g0286931 Lupinus albus HOM05D002775 ORTHO05D003262 6.4e-20 102.1 59 81.4
ECA247G0461 Erigeron canadensis HOM05D002775 ORTHO05D003262 8.3e-20 101.7 58 82.8
Eucgr.A02255 Eucalyptus grandis HOM05D002775 ORTHO05D003262 8.3e-20 101.7 59 81.4
HanXRQChr10g0292571 Helianthus annuus HOM05D002775 ORTHO05D003262 8.3e-20 101.7 58 82.8
MD12G1093300 Malus domestica HOM05D002775 ORTHO05D003262 8.3e-20 101.7 58 84.5
Solyc10g079620.2 Solanum lycopersicum HOM05D002775 ORTHO05D003262 8.3e-20 101.7 59 81.4
unitig_8.g4554 Utricularia gibba HOM05D002775 ORTHO05D003262 8.3e-20 101.7 59 83.1
CSS0046294 Camellia sinensis var. sinensis HOM05D002775 ORTHO05D003262 1.1e-19 101.3 59 81.4
CAN.G641.55 Capsicum annuum HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 84.5
Lj1A1098T77 Lonicera japonica HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 82.8
RcHm_v2.0_Chr2g0125431 Rosa chinensis HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 84.5
Sabra06G0027700 Salix brachista HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 82.8
Sabra16G0039600 Salix brachista HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 82.8
Sabra16G0044300 Salix brachista HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 82.8
Hund19104 Selenicereus undatus HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 82.8
vmacro07805 Vaccinium macrocarpon HOM05D002775 ORTHO05D003262 1.1e-19 101.3 58 84.5
HPP92_013974 Vanilla planifolia HOM05D002775 ORTHO05D003262 1.4e-19 100.9 58 84.5
ATR0745G031 Amborella trichopoda HOM05D002775 ORTHO05D003262 1.9e-19 100.5 58 81.0
Dinv09473 Davidia involucrata HOM05D002775 ORTHO05D003262 1.9e-19 100.5 58 84.5
Dinv15939 Davidia involucrata HOM05D002775 ORTHO05D003262 1.9e-19 100.5 58 84.5
FAN02G3594 Fragaria x ananassa HOM05D002775 ORTHO05D003262 1.9e-19 100.5 57 86.0
FAN05G2772 Fragaria x ananassa HOM05D002775 ORTHO05D003262 1.9e-19 100.5 57 86.0
Nitab4.5_0000515g0010 Nicotiana tabacum HOM05D002775 ORTHO05D003262 1.9e-19 100.5 58 84.5
CsaV3_3G040280 Cucumis sativus L. HOM05D002775 ORTHO05D003262 2.4e-19 100.1 58 82.8
Sp4g23570 Schrenkiella parvula HOM05D002775 ORTHO05D003262 2.4e-19 100.1 58 79.3
Aa31LG3G760 Aethionema arabicum HOM05D002775 ORTHO05D003262 3.2e-19 99.8 58 79.3
CANSAT64G2189 Cannabis sativa HOM05D002775 ORTHO05D003262 3.2e-19 99.8 58 81.0
CDE05G0954 Ceratophyllum demersum HOM05D002775 ORTHO05D003262 3.2e-19 99.8 59 79.7
Gohir.D11G323200 Gossypium hirsutum HOM05D002775 ORTHO05D003262 3.2e-19 99.8 58 82.8
Oeu008217.1 Olea europaea HOM05D002775 ORTHO05D003262 3.2e-19 99.8 58 82.8
Peaxi162Scf00903g00213 Petunia axillaris HOM05D002775 ORTHO05D003262 3.2e-19 99.8 58 81.0
CARHR136340 Cardamine hirsuta HOM05D002775 ORTHO05D003262 4.1e-19 99.4 58 79.3
Cfa020016 Carpinus fangiana HOM05D002775 ORTHO05D003262 4.1e-19 99.4 58 81.0
Sopen10g030260 Solanum pennellii HOM05D002775 ORTHO05D003262 4.1e-19 99.4 58 81.0
PGSC0003DMG400029856 Solanum tuberosum HOM05D002775 ORTHO05D003262 4.1e-19 99.4 58 81.0
Aqoxy1G00357 Aquilegia oxysepala HOM05D002775 ORTHO05D003262 5.4e-19 99.0 58 81.0
CiPaw.09G046700 Carya illinoinensis HOM05D002775 ORTHO05D003262 5.4e-19 99.0 58 81.0
Haze_20203 Corylus avellana HOM05D002775 ORTHO05D003262 5.4e-19 99.0 58 81.0
Nitab4.5_0006876g0030 Nicotiana tabacum HOM05D002775 ORTHO05D003262 5.4e-19 99.0 58 82.8
Sc19g0008240 Simmondsia chinensis HOM05D002775 ORTHO05D003262 5.4e-19 99.0 59 78.0
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 5.4e-19 99.0 143 53.8
Atru.chr1.1504 Acer truncatum HOM05D002775 ORTHO05D003262 7.0e-19 98.6 58 81.0
AUR62030347 Chenopodium quinoa HOM05D002775 ORTHO05D003262 7.0e-19 98.6 59 79.7
MD14G1085300 Malus domestica HOM05D002775 ORTHO05D003262 7.0e-19 98.6 58 81.0
PSO384G3781 Papaver somniferum HOM05D002775 ORTHO05D003262 7.0e-19 98.6 58 81.0
BcaC02g12889 Brassica carinata HOM05D002775 ORTHO05D003262 9.2e-19 98.2 58 77.6
AUR62040835 Chenopodium quinoa HOM05D002775 ORTHO05D003262 9.2e-19 98.2 59 79.7
Gohir.A11G307800 Gossypium hirsutum HOM05D002775 ORTHO05D003262 9.2e-19 98.2 58 81.0
GSVIVG01033613001 Vitis vinifera HOM05D002775 ORTHO05D003262 9.2e-19 98.2 58 81.0
A04p31450 Brassica napus HOM05D002775 ORTHO05D003262 1.2e-18 97.8 58 77.6
C04p68860 Brassica napus HOM05D002775 ORTHO05D003262 1.2e-18 97.8 58 77.6
BraA04t18602Z Brassica rapa HOM05D002775 ORTHO05D003262 1.2e-18 97.8 58 77.6
DCAR_020560 Daucus carota HOM05D002775 ORTHO05D003262 1.2e-18 97.8 58 82.8
Thhalv10016879m.g Eutrema salsugineum HOM05D002775 ORTHO05D003262 1.2e-18 97.8 58 77.6
SEGI_04308 Sequoiadendron giganteum HOM05D002775 ORTHO05D003262 1.2e-18 97.8 58 79.3
THA.LOC104824403 Tarenaya hassleriana HOM05D002775 ORTHO05D003262 1.2e-18 97.8 58 79.3
arahy.Tifrunner.gnm1.ann1.S2PB51 Arachis hypogaea HOM05D002775 ORTHO05D003262 1.6e-18 97.4 59 78.0
Carub.0004s2357 Capsella rubella HOM05D002775 ORTHO05D003262 1.6e-18 97.4 58 79.3
Gorai.007G353200 Gossypium raimondii HOM05D002775 ORTHO05D003262 1.6e-18 97.4 58 81.0
Medtr7g090370 Medicago truncatula HOM05D002775 ORTHO05D003262 1.6e-18 97.4 59 79.7
arahy.Tifrunner.gnm1.ann1.LX9DGM Arachis hypogaea HOM05D002775 ORTHO05D003262 2.1e-18 97.1 59 76.3
Nn7g36669 Nelumbo nucifera HOM05D002775 ORTHO05D003262 2.1e-18 97.1 58 75.9
Rhsim03G0102000 Rhododendron simsii HOM05D002775 ORTHO05D003262 2.1e-18 97.1 57 82.5
AT2G41250 Arabidopsis thaliana HOM05D002775 ORTHO05D003262 2.7e-18 96.7 58 77.6
COL.COLO4_20629 Corchorus olitorius HOM05D002775 ORTHO05D003262 2.7e-18 96.7 58 79.3
Psat3g077120 Pisum sativum HOM05D002775 ORTHO05D003262 2.7e-18 96.7 59 79.7
BolC4t28390H Brassica oleracea HOM05D002775 ORTHO05D003262 3.5e-18 96.3 58 77.6
Duzib128G1018 Durio zibethinus HOM05D002775 ORTHO05D003262 3.5e-18 96.3 58 79.3
Lalb_Chr20g0110181 Lupinus albus HOM05D002775 ORTHO05D003262 3.5e-18 96.3 59 74.6
Ah.13g076910 Amaranthus hybridus HOM05D002775 ORTHO05D003262 4.6e-18 95.9 59 78.0
AL4G39230 Arabidopsis lyrata HOM05D002775 ORTHO05D003262 4.6e-18 95.9 58 77.6
TPR.G32736 Trifolium pratense HOM05D002775 ORTHO05D003262 4.6e-18 95.9 58 81.0
TWI77G0151 Tripterygium wilfordii HOM05D002775 ORTHO05D003262 4.6e-18 95.9 58 79.3
Phvul.001G126300 Phaseolus vulgaris HOM05D002775 ORTHO05D003262 7.8e-18 95.1 59 79.7
VMungo1383G3448 Vigna mungo HOM05D002775 ORTHO05D003262 7.8e-18 95.1 59 81.4
Ca_08411_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 1.0e-17 94.7 58 79.3
THA.LOC104816223 Tarenaya hassleriana HOM05D002775 ORTHO05D003262 3.0e-17 93.2 58 75.9
TWI74G0453 Tripterygium wilfordii HOM05D002775 ORTHO05D003262 3.0e-17 93.2 58 75.9
Zm00001eb272120 Zea mays HOM05D004657 ORTHO05D005562 3.0e-17 93.2 68 83.8
Glyma.03G130300 Glycine max HOM05D002775 ORTHO05D003262 3.9e-17 92.8 58 79.3
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 5.1e-17 92.4 140 52.9
CSS0019588 Camellia sinensis var. sinensis HOM05D002775 ORTHO05D003262 6.6e-17 92.0 52 82.7
CSS0003680 Camellia sinensis var. sinensis HOM05D002775 ORTHO05D003262 1.5e-16 90.9 56 78.6
SMO232G0103 Selaginella moellendorffii HOM05D002775 ORTHO05D003262 1.8e-14 84.0 58 69.0
CAN.G242.11 Capsicum annuum HOM05D002149 ORTHO05D002154 5.2e-14 82.4 67 64.2
Lj1A1096T60 Lonicera japonica HOM05D002775 ORTHO05D003262 5.2e-14 82.4 46 82.6
CBR_g11177 Chara braunii HOM05D002775 ORTHO05D003262 1.3e-12 77.8 58 60.3
CSS0003428 Camellia sinensis var. sinensis HOM05D002775 ORTHO05D003262 3.5e-10 69.7 56 69.6
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.8e-10 68.6 54 57.4
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.1e-09 65.9 57 54.4
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 8.6e-09 65.1 48 64.6
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 9.5e-08 61.6 53 54.7
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.2e-07 61.2 54 51.9
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.6e-07 60.8 54 51.9
CDE05G2768 Ceratophyllum demersum HOM05D002775 ORTHO05D003262 1.6e-07 60.8 49 65.3
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.1e-07 60.5 48 60.4
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.1e-07 60.5 49 67.3
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.8e-07 60.1 55 47.3
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.8e-07 60.1 54 48.1
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.8e-07 60.1 54 51.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.7e-07 59.3 54 51.9
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 6.2e-07 58.9 54 50.0
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 6.2e-07 58.9 54 48.1
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 8.1e-07 58.5 54 51.9
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 8.1e-07 58.5 54 46.3
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.1e-06 58.2 60 46.7
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.1e-06 58.2 54 48.1
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.1e-06 58.2 67 44.8
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.1e-06 58.2 64 45.3
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.4e-06 57.8 72 44.4
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.4e-06 57.8 49 53.1
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.8e-06 57.4 56 46.4
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.8e-06 57.4 86 40.7
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.8e-06 57.4 87 40.2
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.8e-06 57.4 54 46.3
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 2.4e-06 57.0 54 46.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 2.4e-06 57.0 54 46.3
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.4e-06 57.0 54 48.1
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.4e-06 57.0 49 51.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.4e-06 57.0 53 47.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 2.4e-06 57.0 54 48.1
Cre09.g403750 Chlamydomonas reinhardtii HOM05D002775 ORTHO05D003262 4.0e-06 56.2 49 63.3
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 5.2e-06 55.8 54 46.3
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 5.2e-06 55.8 54 46.3
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 6.8e-06 55.5 46 54.3
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 6.8e-06 55.5 98 36.7
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 6.8e-06 55.5 81 40.7
AagrBONN_evm.TU.Sc2ySwM_368.2070 Anthoceros agrestis HOM05D002775 ORTHO05D003262 8.9e-06 55.1 47 57.4


User provided reference genes

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