Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 9.2e-96 353.6 185 100.0
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 9.3e-72 273.9 201 77.6
Zm00001eb342660 Zea mays HOM05D014690 ORTHO05D019327 1.9e-40 169.9 106 88.7
Zm00001eb294650 Zea mays HOM05D014690 ORTHO05D019327 2.4e-35 152.9 109 82.6
Zm00001eb056570 Zea mays HOM05D014690 ORTHO05D019327 1.3e-28 130.6 84 89.3
Zm00001eb182570 Zea mays HOM05D014690 ORTHO05D019327 5.3e-19 98.6 64 89.1
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 2.7e-15 86.3 52 82.7
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 5.2e-14 82.0 56 73.2
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 6.8e-14 81.6 52 76.9
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 2.6e-13 79.7 55 69.1
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 2.6e-13 79.7 55 70.9
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 5.7e-13 78.6 52 73.1
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 5.7e-13 78.6 55 70.9
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 7.5e-13 78.2 55 67.3
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 9.8e-13 77.8 52 71.2
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 9.8e-13 77.8 55 67.3
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 9.8e-13 77.8 52 71.2
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 9.8e-13 77.8 55 67.3
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 9.8e-13 77.8 55 67.3
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 9.8e-13 77.8 52 71.2
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 9.8e-13 77.8 55 67.3
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.3e-12 77.4 55 69.1
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 1.3e-12 77.4 55 69.1
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 2.2e-12 76.6 52 69.2
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 2.2e-12 76.6 52 69.2
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 2.2e-12 76.6 52 69.2
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 2.2e-12 76.6 55 69.1
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.8e-12 76.3 55 70.9
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 2.8e-12 76.3 55 67.3
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 3.7e-12 75.9 55 67.3
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 4.8e-12 75.5 55 69.1
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 4.8e-12 75.5 55 63.6
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 4.8e-12 75.5 52 73.1
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 6.3e-12 75.1 55 65.5
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 6.3e-12 75.1 55 65.5
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 6.3e-12 75.1 55 67.3
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 8.3e-12 74.7 55 67.3
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 1.1e-11 74.3 55 67.3
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 1.1e-11 74.3 55 65.5
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.1e-11 74.3 55 67.3
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 1.4e-11 73.9 55 69.1
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.4e-11 73.9 55 65.5
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.8e-11 73.6 55 67.3
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.8e-11 73.6 55 67.3
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.8e-11 73.6 55 65.5
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.8e-11 73.6 55 65.5
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.8e-11 73.6 55 65.5
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 2.4e-11 73.2 55 63.6
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 2.4e-11 73.2 56 66.1
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 2.4e-11 73.2 55 63.6
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 2.4e-11 73.2 55 63.6
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 2.4e-11 73.2 55 67.3
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 2.4e-11 73.2 55 65.5
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.1e-11 72.8 55 65.5
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.1e-11 72.8 55 65.5
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 3.1e-11 72.8 55 65.5
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 4.1e-11 72.4 55 65.5
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 4.1e-11 72.4 55 65.5
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 5.4e-11 72.0 55 63.6
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 5.4e-11 72.0 55 63.6
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 5.4e-11 72.0 55 63.6
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 5.4e-11 72.0 55 65.5
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 5.4e-11 72.0 55 65.5
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 7.0e-11 71.6 55 63.6
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 7.0e-11 71.6 54 66.7
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 7.0e-11 71.6 52 65.4
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 7.0e-11 71.6 55 65.5
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 9.1e-11 71.2 52 67.3
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 9.1e-11 71.2 52 67.3
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 9.1e-11 71.2 55 65.5
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 9.1e-11 71.2 158 38.0
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 9.1e-11 71.2 55 63.6
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 9.1e-11 71.2 55 65.5
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 63.6
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 63.6
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 61.8
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 61.8
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 61.8
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 65.5
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 63.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 63.6
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 63.6
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 1.2e-10 70.9 52 67.3
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.2e-10 70.9 52 67.3
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.2e-10 70.9 52 65.4
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.2e-10 70.9 52 65.4
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 1.2e-10 70.9 55 63.6
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.6e-10 70.5 52 65.4
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.6e-10 70.5 52 63.5
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.6e-10 70.5 55 61.8
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 1.6e-10 70.5 52 67.3
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 1.6e-10 70.5 55 65.5
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 2.0e-10 70.1 50 68.0
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 2.0e-10 70.1 55 63.6
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 2.0e-10 70.1 55 63.6
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 2.0e-10 70.1 52 65.4
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.0e-10 70.1 55 61.8
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 2.0e-10 70.1 52 65.4
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 2.7e-10 69.7 55 61.8
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.7e-10 69.7 52 65.4
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.7e-10 69.7 52 65.4
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 2.7e-10 69.7 52 65.4
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 2.7e-10 69.7 55 63.6
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 2.7e-10 69.7 52 65.4
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 2.7e-10 69.7 52 65.4
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 3.5e-10 69.3 55 61.8
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 3.5e-10 69.3 55 61.8
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 3.5e-10 69.3 55 61.8
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 3.5e-10 69.3 55 63.6
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 5.9e-10 68.6 55 60.0
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 5.9e-10 68.6 52 65.4
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 7.7e-10 68.2 55 60.0
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 1.0e-09 67.8 50 64.0
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.0e-09 67.8 52 61.5
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 1.3e-09 67.4 52 61.5
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.3e-09 67.4 52 61.5
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 1.3e-09 67.4 52 63.5
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-09 67.0 55 58.2
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.7e-09 67.0 52 61.5
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.7e-09 67.0 52 61.5
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 9.5e-08 61.2 168 32.7
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.8e-07 59.7 53 56.6
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 8.8e-06 54.7 34 73.5
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 8.8e-06 54.7 34 73.5


User provided reference genes

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