Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.2e-200 703.0 351 100.0
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 4.8e-162 574.7 393 73.0
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 2.5e-126 456.1 391 57.8
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 5.6e-126 454.9 391 57.0
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 4.7e-125 451.8 390 57.9
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 5.2e-124 448.4 390 57.4
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 8.3e-122 441.0 370 58.6
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 1.4e-121 440.3 393 55.5
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.4e-121 440.3 391 56.3
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 1.2e-120 437.2 391 56.0
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 2.1e-120 436.4 391 55.5
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 2.7e-120 436.0 391 56.5
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.3e-119 433.7 386 55.7
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 2.3e-119 433.0 391 55.8
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 3.0e-119 432.6 391 56.3
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 3.9e-119 432.2 390 55.9
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 1.9e-118 429.9 390 55.9
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 7.3e-118 427.9 391 55.5
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 9.5e-118 427.6 390 55.4
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 1.1e-116 424.1 402 54.5
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 1.4e-116 423.7 415 52.8
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 1.8e-116 423.3 390 54.9
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 1.8e-116 423.3 391 54.2
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 1.8e-116 423.3 390 54.4
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 2.3e-116 422.9 390 54.9
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 4.0e-116 422.2 391 54.5
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 8.9e-116 421.0 390 54.9
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 1.5e-115 420.2 391 54.7
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 2.0e-115 419.9 390 54.6
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 3.4e-115 419.1 393 53.7
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 4.4e-115 418.7 386 55.4
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 5.8e-115 418.3 390 53.1
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 1.3e-114 417.2 390 54.6
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.3e-114 417.2 391 53.2
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 1.3e-114 417.2 391 55.2
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 2.9e-114 416.0 390 53.8
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 2.9e-114 416.0 386 54.4
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 3.7e-114 415.6 381 55.4
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 6.4e-114 414.8 391 53.5
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 8.3e-114 414.5 391 53.5
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.1e-113 414.1 391 52.9
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 1.9e-113 413.3 390 52.8
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 1.9e-113 413.3 390 54.1
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.9e-113 413.3 390 53.3
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 1.9e-113 413.3 391 54.0
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 3.2e-113 412.5 369 55.8
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 7.1e-113 411.4 395 53.2
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 7.1e-113 411.4 391 55.0
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 4.6e-112 408.7 391 53.5
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 6.0e-112 408.3 392 51.3
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 1.0e-111 407.5 391 52.9
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 2.3e-111 406.4 364 54.9
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.3e-111 406.4 391 53.2
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 3.0e-111 406.0 390 52.8
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 3.0e-111 406.0 390 52.3
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 1.1e-110 404.1 390 53.3
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.9e-110 403.3 390 51.8
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 3.3e-110 402.5 468 46.6
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 7.3e-110 401.4 390 51.5
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 7.3e-110 401.4 394 52.5
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 7.3e-110 401.4 388 51.3
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 7.3e-110 401.4 438 49.3
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 1.4e-108 397.1 391 50.9
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 4.0e-108 395.6 388 52.1
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 8.9e-108 394.4 388 51.8
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 8.9e-108 394.4 388 51.8
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 8.9e-108 394.4 392 51.5
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 2.6e-107 392.9 388 51.5
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 2.6e-107 392.9 388 51.5
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 2.6e-107 392.9 388 51.0
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 4.4e-107 392.1 394 51.3
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 4.9e-106 388.7 395 51.4
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.9e-105 386.7 391 51.4
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 2.4e-105 386.3 374 52.4
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 5.4e-105 385.2 390 51.0
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 7.1e-105 384.8 383 52.0
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.2e-104 384.0 390 51.0
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 6.0e-104 381.7 383 52.2
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 6.0e-104 381.7 352 54.3
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 7.8e-104 381.3 383 52.0
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 6.6e-103 378.3 388 50.5
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 8.7e-103 377.9 381 50.1
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 3.3e-102 375.9 391 50.6
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 1.6e-101 373.6 391 50.4
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 3.4e-99 365.9 382 50.3
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 1.3e-98 364.0 337 53.7
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 6.0e-96 355.1 301 59.1
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.9e-94 350.1 391 47.1
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 7.3e-94 348.2 349 53.0
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 9.6e-94 347.8 324 53.1
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 8.1e-93 344.7 374 49.7
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 8.1e-93 344.7 322 54.3
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 5.3e-92 342.0 388 48.2
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 2.4e-89 333.2 386 46.6
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 6.0e-88 328.6 391 44.8
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 9.6e-86 321.2 470 40.6
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 1.1e-84 317.8 298 55.0
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 1.4e-84 317.4 391 44.2
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.3e-82 310.8 290 54.8
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 3.9e-79 299.3 341 46.3
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 3.9e-79 299.3 280 55.4
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.7e-79 298.5 346 46.8
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 4.1e-76 289.3 259 55.2
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 2.5e-73 280.0 259 52.5
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 9.3e-73 278.1 261 52.1
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 2.7e-72 276.6 307 48.5
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 2.7e-72 276.6 311 47.6
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 5.1e-71 272.3 306 48.0
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.4e-65 254.2 326 42.9
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 5.5e-65 252.3 386 36.8
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 5.5e-57 225.7 299 43.5
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.1e-52 211.5 179 57.5
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 2.4e-52 210.3 221 52.0
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 5.3e-52 209.1 260 44.2
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 1.2e-48 198.0 212 49.5
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 7.4e-46 188.7 298 36.2
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 4.1e-44 183.0 310 36.1
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 5.3e-44 182.6 156 57.7
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 7.0e-44 182.2 324 33.6
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 4.7e-40 169.5 135 60.0
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 1.8e-36 157.5 175 42.3
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 2.2e-34 150.6 150 51.3
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.2e-34 150.6 125 59.2
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 8.5e-34 148.7 155 48.4
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 1.1e-33 148.3 151 50.3
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.1e-24 115.9 81 66.7
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 2.3e-23 114.0 81 65.4
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 5.2e-23 112.8 310 27.7
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 3.4e-22 110.2 110 52.7
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 5.0e-18 96.3 153 42.5
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 4.3e-17 93.2 76 59.2
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 5.6e-17 92.8 76 57.9
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 7.3e-17 92.4 76 57.9
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 6.8e-15 85.9 279 22.6
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 7.5e-14 82.4 63 65.1
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 4.1e-12 76.6 57 56.1
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 3.3e-09 67.0 119 32.8


User provided reference genes

Program Settings