Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 2.6e-136 488.8 259 100.0
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 1.1e-123 446.8 260 92.3
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 1.2e-88 330.5 270 71.5
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 7.4e-67 258.1 213 64.8
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 2.8e-66 256.1 210 65.7
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 3.7e-66 255.8 203 67.0
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 4.8e-66 255.4 203 66.0
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 8.2e-66 254.6 230 60.0
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 8.2e-66 254.6 228 61.4
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.4e-65 253.8 196 66.8
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 1.4e-65 253.8 253 58.9
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.4e-65 253.8 250 59.2
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 1.4e-65 253.8 197 67.0
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 3.1e-65 252.7 249 59.4
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 3.1e-65 252.7 249 59.4
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.0e-65 252.3 215 64.2
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 6.9e-65 251.5 245 59.6
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 9.0e-65 251.1 222 62.2
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 9.0e-65 251.1 264 58.3
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 9.0e-65 251.1 230 62.2
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 1.2e-64 250.8 195 66.7
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.0e-64 250.0 264 56.8
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 2.0e-64 250.0 203 65.0
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.4e-64 249.2 255 55.3
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 4.5e-64 248.8 251 58.6
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 5.8e-64 248.4 202 65.8
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 7.6e-64 248.1 248 58.5
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 1.0e-63 247.7 195 66.2
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.0e-63 247.7 248 55.6
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 1.0e-63 247.7 234 58.5
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.0e-63 247.7 251 57.4
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.3e-63 247.3 239 59.4
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.7e-63 246.9 247 57.1
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 1.7e-63 246.9 185 66.5
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 1.7e-63 246.9 251 56.2
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 2.2e-63 246.5 267 56.6
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 2.2e-63 246.5 215 62.3
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 4.9e-63 245.4 233 59.7
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 4.9e-63 245.4 192 66.1
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 6.5e-63 245.0 196 62.2
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 6.5e-63 245.0 229 59.4
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 6.5e-63 245.0 206 64.1
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 8.4e-63 244.6 248 56.9
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 1.1e-62 244.2 248 58.5
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.4e-62 243.8 207 64.3
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 1.9e-62 243.4 228 59.6
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 2.5e-62 243.0 202 62.9
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 2.5e-62 243.0 250 56.4
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 4.2e-62 242.3 267 55.1
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 5.5e-62 241.9 189 65.1
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 7.1e-62 241.5 246 55.7
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 9.3e-62 241.1 202 62.9
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 9.3e-62 241.1 243 56.0
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 9.3e-62 241.1 236 56.4
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 9.3e-62 241.1 244 54.5
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.2e-61 240.7 191 65.4
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.2e-61 240.7 186 65.1
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.2e-61 240.7 186 65.1
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 2.1e-61 240.0 241 56.0
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.7e-61 239.6 225 56.9
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.7e-61 239.6 196 61.2
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 3.5e-61 239.2 257 54.5
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 3.5e-61 239.2 207 63.3
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 6.0e-61 238.4 237 57.4
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 1.0e-60 237.7 239 56.5
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.0e-60 237.7 225 59.1
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.3e-60 237.3 240 56.7
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 1.8e-60 236.9 194 62.4
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.8e-60 236.9 191 64.9
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 3.9e-60 235.7 255 54.1
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 3.9e-60 235.7 255 54.1
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 6.7e-60 235.0 235 55.7
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 8.7e-60 234.6 255 53.7
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 8.7e-60 234.6 255 53.7
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 8.7e-60 234.6 218 59.2
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 8.7e-60 234.6 248 55.6
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.1e-59 234.2 249 55.8
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.1e-59 234.2 249 55.8
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 1.5e-59 233.8 255 53.7
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.5e-59 233.8 214 58.9
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 1.5e-59 233.8 203 62.1
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 2.5e-59 233.0 204 61.3
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 3.3e-59 232.6 251 57.4
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 3.3e-59 232.6 243 55.6
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 4.3e-59 232.3 259 53.3
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 7.4e-59 231.5 199 60.8
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 9.7e-59 231.1 234 56.0
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 2.8e-58 229.6 203 60.1
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 2.8e-58 229.6 239 55.6
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 6.3e-58 228.4 249 53.8
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 6.3e-58 228.4 173 67.1
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 1.4e-57 227.3 203 59.6
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.4e-57 226.5 236 54.2
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 3.1e-57 226.1 233 54.9
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 3.1e-57 226.1 233 54.9
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.2e-56 224.2 232 53.4
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.0e-56 223.4 228 54.4
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.6e-56 223.0 247 52.6
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.2e-55 219.9 247 51.8
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 3.8e-55 219.2 179 62.0
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 7.9e-53 211.5 268 50.4
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 1.0e-52 211.1 211 54.0
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 3.9e-52 209.1 206 55.3
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 3.3e-51 206.1 217 56.7
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 2.8e-50 203.0 165 62.4
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.4e-48 196.1 209 51.7
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 5.9e-48 195.3 202 55.0
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 5.0e-47 192.2 222 49.1
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.5e-46 189.9 146 64.4
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 1.2e-40 171.0 254 43.7
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 2.3e-36 156.8 171 55.0
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 5.3e-25 119.0 98 58.2
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 2.2e-23 113.6 94 62.8
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 3.5e-16 89.7 108 49.1
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-16 88.6 105 47.6
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 6.6e-15 85.5 71 59.2
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.1e-13 80.5 72 56.9
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 8.0e-13 78.6 107 43.0
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 4.5e-08 62.8 48 62.5


User provided reference genes

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