Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.0e-76 290.8 262 100.0
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 9.8e-43 177.9 259 83.4
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 5.6e-30 135.6 262 69.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 7.8e-24 115.2 251 68.1
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 9.6e-22 108.2 252 64.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 9.6e-22 108.2 252 68.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.6e-21 107.5 260 63.8
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 8.1e-21 105.1 252 67.1
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 4.0e-20 102.8 257 67.3
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 8.9e-20 101.7 253 66.8
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.2e-19 101.3 253 66.0
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.5e-19 100.9 257 66.5
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.4e-19 99.4 255 65.1
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 4.4e-19 99.4 257 63.8
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 7.6e-19 98.6 252 67.5
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.3e-18 97.8 252 63.9
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-18 97.8 256 66.0
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.7e-18 97.4 256 56.2
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 2.2e-18 97.1 252 67.1
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.2e-18 97.1 256 66.0
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 2.9e-18 96.7 252 63.9
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.9e-18 96.7 252 64.3
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.8e-18 96.3 252 63.9
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.8e-18 96.3 252 63.9
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 6.4e-18 95.5 252 63.9
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.4e-17 94.4 252 67.1
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.9e-17 94.0 253 68.8
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 2.4e-17 93.6 252 63.9
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.2e-17 92.8 253 67.2
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.2e-16 91.3 252 65.1
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.2e-16 91.3 257 66.5
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.7e-16 90.1 255 64.7
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.6e-16 89.4 248 66.5
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 6.0e-16 89.0 220 57.7
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 7.8e-16 88.6 257 63.8
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.0e-15 88.2 250 62.0
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.3e-15 87.8 258 42.6
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.3e-15 87.0 255 62.4
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 5.1e-15 85.9 255 63.5
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 5.1e-15 85.9 252 63.9
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 8.7e-15 85.1 220 72.3
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 8.7e-15 85.1 258 65.5
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.1e-14 84.7 252 65.1
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.5e-14 84.3 248 63.3
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.3e-14 83.2 233 70.8
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 7.3e-14 82.0 259 60.6
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.1e-13 80.5 253 61.3
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.1e-13 80.5 52 75.0
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 2.1e-13 80.5 253 55.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.2e-13 79.0 57 68.4
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.1e-12 78.2 250 43.6
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.4e-12 77.8 57 66.7
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.4e-12 77.8 257 62.3
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.4e-12 77.8 52 69.2
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.8e-12 77.4 56 69.6
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 1.8e-12 77.4 52 69.2
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.4e-12 77.0 249 62.7
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.4e-12 77.0 57 66.7
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 2.4e-12 77.0 57 64.9
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.4e-12 77.0 52 69.2
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 3.1e-12 76.6 254 61.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.0e-12 76.3 57 66.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 4.0e-12 76.3 52 69.2
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.3e-12 75.9 52 69.2
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 9.0e-12 75.1 53 67.9
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.0e-12 75.1 53 67.9
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.0e-12 75.1 53 67.9
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.0e-12 75.1 53 67.9
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.0e-12 75.1 53 67.9
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.5e-11 74.3 252 61.1
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.5e-11 74.3 52 65.4
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.0e-11 73.9 52 71.2
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 2.6e-11 73.6 50 70.0
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.4e-11 73.2 249 63.9
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.4e-11 73.2 57 64.9
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 4.4e-11 72.8 52 67.3
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.4e-11 72.8 262 60.7
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.4e-11 72.8 52 67.3
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 5.8e-11 72.4 44 68.2
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 5.8e-11 72.4 52 65.4
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 7.6e-11 72.0 52 65.4
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 7.6e-11 72.0 52 65.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 7.6e-11 72.0 52 65.4
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.3e-10 71.2 52 63.5
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.3e-10 71.2 52 65.4
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.7e-10 70.9 52 65.4
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.2e-10 70.5 51 64.7
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.9e-10 70.1 60 63.3
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 3.8e-10 69.7 58 65.5
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 6.4e-10 68.9 57 59.6
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 6.4e-10 68.9 47 68.1
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 8.4e-10 68.6 59 59.3
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 8.4e-10 68.6 52 63.5
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 3.2e-09 66.6 63 63.5
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 4.2e-09 66.2 240 61.2
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 9.3e-09 65.1 51 62.7
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 9.3e-09 65.1 62 62.9
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 9.3e-09 65.1 252 61.1
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.2e-08 64.7 58 60.3
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.6e-08 64.3 52 59.6
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.6e-08 64.3 57 61.4
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.6e-08 64.3 56 55.4
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.6e-08 64.3 52 59.6
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 2.7e-08 63.5 51 56.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.7e-08 63.5 58 60.3
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.7e-08 63.5 46 63.0
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 2.7e-08 63.5 64 54.7
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.7e-08 63.5 52 59.6
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.7e-08 63.5 59 59.3
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 3.5e-08 63.2 52 61.5
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.5e-08 63.2 59 59.3
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 4.6e-08 62.8 57 61.4
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 4.6e-08 62.8 57 61.4
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 4.6e-08 62.8 56 53.6
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 6.0e-08 62.4 59 55.9
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.0e-07 61.6 63 55.6
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.0e-07 61.6 59 59.3
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.0e-07 61.6 57 57.9
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.3e-07 61.2 59 50.8
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.7e-07 60.8 58 51.7
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-07 60.8 58 56.9
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.7e-07 60.8 57 54.4
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.3e-07 60.5 59 50.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.3e-07 60.5 60 53.3
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.3e-07 60.5 58 58.6
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 3.0e-07 60.1 56 55.4
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 3.0e-07 60.1 56 55.4
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.9e-07 59.7 59 50.8
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.9e-07 59.7 56 53.6
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.9e-07 59.7 59 50.8
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.9e-07 59.7 57 54.4
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 8.7e-07 58.5 58 55.2
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 8.7e-07 58.5 58 58.6
Psat5g004560 Pisum sativum HOM05D004463 ORTHO05D004724 1.1e-06 58.2 60 45.0
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.1e-06 58.2 59 55.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 1.5e-06 57.8 58 56.9
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 3.3e-06 56.6 58 55.2
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.3e-06 56.6 58 55.2
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.3e-06 56.6 58 55.2
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.3e-06 56.6 58 55.2
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 3.3e-06 56.6 57 52.6
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 4.3e-06 56.2 57 52.6
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 4.3e-06 56.2 106 47.2
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 4.3e-06 56.2 58 55.2
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.6e-06 55.8 46 60.9
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 9.6e-06 55.1 55 49.1
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.6e-06 55.1 44 56.8
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 9.6e-06 55.1 80 37.5
Nitab4.5_0001154g0030 Nicotiana tabacum HOM05D061411 ORTHO05D004724 9.6e-06 55.1 30 70.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 9.6e-06 55.1 57 52.6


User provided reference genes

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