Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 5.4e-201 704.1 358 100.0
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.6e-173 612.8 340 92.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 2.9e-162 575.5 360 83.6
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 2.3e-98 363.2 369 52.6
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 6.1e-96 355.1 373 51.5
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 7.5e-94 348.2 374 49.7
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.0e-91 340.1 374 48.9
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 4.5e-91 339.0 368 49.2
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 5.9e-91 338.6 374 49.5
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 7.8e-91 338.2 368 51.4
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.8e-90 335.9 365 50.1
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.5e-89 334.0 368 50.5
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 1.9e-89 333.6 370 49.7
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.9e-89 333.6 368 49.5
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.5e-89 333.2 376 48.9
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 3.3e-89 332.8 382 48.7
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.3e-89 332.8 365 49.3
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 9.5e-89 331.3 365 49.6
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 9.5e-89 331.3 368 49.2
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 9.5e-89 331.3 375 50.4
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-88 330.9 365 49.6
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-88 330.9 365 49.6
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.6e-88 330.5 378 48.7
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 2.1e-88 330.1 366 49.5
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.1e-88 330.1 365 49.3
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.8e-88 329.7 374 48.4
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 3.6e-88 329.3 376 48.9
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.4e-87 327.4 374 48.1
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 3.0e-87 326.2 369 50.1
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 3.0e-87 326.2 371 49.9
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 4.0e-87 325.9 360 51.4
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.4e-86 322.8 381 48.3
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 4.4e-86 322.4 370 47.6
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 9.8e-86 321.2 371 48.2
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 9.8e-86 321.2 370 47.6
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 2.2e-85 320.1 384 47.4
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 4.9e-85 318.9 366 49.5
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 6.4e-85 318.5 370 46.8
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 8.3e-85 318.2 366 48.9
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.1e-84 317.8 369 47.7
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.4e-84 317.4 371 47.7
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.8e-84 317.0 370 47.3
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.8e-84 317.0 378 47.6
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 2.4e-84 316.6 372 47.8
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 2.4e-84 316.6 376 47.1
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 2.4e-84 316.6 373 48.0
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 3.2e-84 316.2 378 47.4
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 3.2e-84 316.2 365 49.3
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 7.0e-84 315.1 373 47.5
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 7.0e-84 315.1 369 47.2
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.0e-83 313.5 378 47.4
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.7e-83 313.2 374 47.3
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.5e-83 312.8 383 44.9
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.5e-83 312.8 371 46.9
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.5e-83 312.8 368 47.6
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 6.0e-83 312.0 368 46.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.0e-83 312.0 383 44.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 7.8e-83 311.6 382 47.4
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.8e-83 311.6 383 45.2
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.3e-82 310.8 368 47.3
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 2.3e-82 310.1 373 47.5
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.3e-82 310.1 376 46.8
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.0e-82 309.7 366 48.4
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 6.6e-82 308.5 376 46.0
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 6.6e-82 308.5 371 48.2
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 8.6e-82 308.1 370 48.1
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.9e-81 307.0 370 48.1
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.9e-81 307.0 363 48.2
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.6e-81 305.4 374 46.5
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 5.6e-81 305.4 383 47.0
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.1e-80 303.5 370 46.8
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.8e-80 303.1 375 45.9
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.8e-80 303.1 371 47.2
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 4.7e-80 302.4 374 45.7
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 1.4e-79 300.8 378 46.3
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.3e-79 300.1 373 46.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 4.0e-79 299.3 366 46.4
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 4.0e-79 299.3 380 45.8
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 8.9e-79 298.1 378 45.2
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 8.9e-79 298.1 356 47.8
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 2.0e-78 297.0 375 45.9
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 2.0e-78 297.0 374 45.2
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 2.6e-78 296.6 375 45.3
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 2.6e-78 296.6 375 45.9
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 2.6e-78 296.6 378 45.2
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.4e-78 296.2 378 45.2
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 3.4e-78 296.2 373 47.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 5.8e-78 295.4 375 45.6
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 5.8e-78 295.4 374 46.0
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.3e-77 294.3 378 44.4
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.2e-77 293.5 376 44.7
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 6.4e-77 292.0 355 48.2
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 8.3e-77 291.6 464 40.3
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.4e-76 290.8 346 47.4
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.4e-76 290.0 378 44.7
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.1e-76 289.3 355 45.6
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-75 287.7 372 43.5
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 3.9e-74 282.7 371 44.7
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.0e-74 282.3 370 43.8
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.0e-74 282.3 370 43.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-73 281.2 358 43.3
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.5e-73 280.8 370 43.0
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.5e-73 280.8 371 44.5
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.9e-73 280.4 362 43.4
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 5.2e-71 272.3 368 43.5
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.3e-69 267.7 294 49.0
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.7e-69 266.2 363 44.1
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.1e-68 262.7 332 45.2
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 5.4e-68 262.3 333 45.3
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 6.0e-67 258.8 358 44.7
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 6.6e-66 255.4 374 40.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 1.1e-63 248.1 379 41.2
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 9.2e-60 235.0 366 40.2
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 5.1e-58 229.2 195 55.9
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 6.6e-58 228.8 296 44.3
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 4.2e-52 209.5 370 36.5
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 7.1e-52 208.8 340 40.0
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 5.6e-49 199.1 335 34.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 5.8e-46 189.1 191 50.8
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 5.1e-42 176.0 232 47.8
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 9.6e-41 171.8 344 35.8
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 9.9e-38 161.8 288 36.8
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.1e-36 158.3 185 43.8
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.5e-33 147.1 176 50.6
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.8e-32 143.7 295 30.5
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 2.3e-26 124.0 321 31.2
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.3e-23 112.8 124 46.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.0e-23 112.1 124 47.6
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 9.0e-23 112.1 152 40.8
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 8.5e-21 105.5 107 48.6
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 3.6e-19 100.1 137 40.9
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.9e-19 99.0 124 45.2
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.7e-13 81.3 80 46.2
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.1e-12 78.6 80 46.2
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.5e-12 77.4 80 45.0
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 3.6e-11 73.6 110 40.0
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.9e-11 72.4 80 41.2
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-09 68.6 90 40.0
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 2.0e-09 67.8 42 78.6
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 5.7e-09 66.2 223 30.5
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.4e-09 65.9 65 50.8
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.7e-08 63.5 59 54.2
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 4.8e-08 63.2 59 59.3
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-07 60.8 43 65.1
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-07 60.8 43 65.1
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.4e-07 60.8 65 47.7
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 9.1e-07 58.9 64 43.8


User provided reference genes

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