Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 4.1e-59 231.1 110 100.0
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 4.0e-22 108.2 55 90.9
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.2e-21 106.7 55 89.1
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 3.4e-21 105.1 55 89.1
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.7e-18 95.5 55 78.2
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.5e-16 89.0 55 74.5
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.5e-16 89.0 55 74.5
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.5e-16 89.0 55 74.5
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 2.5e-16 89.0 55 74.5
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 7.3e-16 87.4 55 72.7
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 7.3e-16 87.4 55 72.7
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.6e-15 86.3 55 72.7
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.1e-15 85.9 55 72.7
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 2.8e-15 85.5 55 70.9
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 3.6e-15 85.1 55 72.7
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 3.6e-15 85.1 55 72.7
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 3.6e-15 85.1 55 70.9
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 8.1e-15 84.0 55 69.1
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 1.1e-14 83.6 55 70.9
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.1e-14 83.6 55 70.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.1e-14 83.6 55 69.1
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.1e-14 83.6 55 69.1
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 1.4e-14 83.2 55 70.9
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.8e-14 82.8 55 67.3
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 2.4e-14 82.4 55 70.9
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.4e-14 82.4 55 69.1
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 2.4e-14 82.4 55 69.1
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 3.1e-14 82.0 55 70.9
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 4.0e-14 81.6 55 69.1
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 4.0e-14 81.6 55 69.1
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 5.2e-14 81.3 55 70.9
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 5.2e-14 81.3 55 69.1
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 5.2e-14 81.3 55 69.1
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 5.2e-14 81.3 53 71.7
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 6.9e-14 80.9 55 69.1
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 6.9e-14 80.9 55 65.5
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 6.9e-14 80.9 55 67.3
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 6.9e-14 80.9 53 69.8
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 9.0e-14 80.5 55 69.1
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 9.0e-14 80.5 55 67.3
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 9.0e-14 80.5 55 67.3
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 1.2e-13 80.1 55 67.3
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.2e-13 80.1 53 69.8
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 1.5e-13 79.7 55 69.1
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.5e-13 79.7 55 69.1
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 1.5e-13 79.7 55 69.1
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 1.5e-13 79.7 55 69.1
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.5e-13 79.7 55 65.5
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.5e-13 79.7 55 65.5
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 1.5e-13 79.7 55 65.5
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 2.0e-13 79.3 55 67.3
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 2.6e-13 79.0 53 69.8
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 2.6e-13 79.0 55 69.1
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 2.6e-13 79.0 55 67.3
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 3.4e-13 78.6 55 65.5
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 3.4e-13 78.6 55 65.5
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 3.4e-13 78.6 55 67.3
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 3.4e-13 78.6 55 65.5
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.4e-13 78.6 55 65.5
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 4.4e-13 78.2 55 67.3
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 4.4e-13 78.2 55 69.1
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 4.4e-13 78.2 55 67.3
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 4.4e-13 78.2 55 65.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 4.4e-13 78.2 55 63.6
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 4.4e-13 78.2 53 67.9
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 5.8e-13 77.8 55 67.3
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 7.6e-13 77.4 55 65.5
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 7.6e-13 77.4 55 65.5
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 7.6e-13 77.4 55 69.1
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 9.9e-13 77.0 55 65.5
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 9.9e-13 77.0 55 67.3
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 9.9e-13 77.0 55 67.3
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 9.9e-13 77.0 53 66.0
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 9.9e-13 77.0 55 65.5
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 9.9e-13 77.0 55 65.5
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 9.9e-13 77.0 55 65.5
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 9.9e-13 77.0 55 65.5
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 9.9e-13 77.0 53 67.9
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.3e-12 76.6 53 67.9
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.7e-12 76.3 55 63.6
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 2.2e-12 75.9 55 65.5
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 2.2e-12 75.9 55 65.5
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 2.9e-12 75.5 53 64.2
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 2.9e-12 75.5 53 64.2
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 2.9e-12 75.5 55 61.8
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 2.9e-12 75.5 53 66.0
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.9e-12 75.5 55 63.6
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 3.8e-12 75.1 55 65.5
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 3.8e-12 75.1 55 63.6
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 3.8e-12 75.1 55 63.6
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 3.8e-12 75.1 55 61.8
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 3.8e-12 75.1 55 63.6
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 4.9e-12 74.7 55 63.6
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 4.9e-12 74.7 55 63.6
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 6.4e-12 74.3 55 65.5
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 8.4e-12 73.9 55 63.6
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 8.4e-12 73.9 55 61.8
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.1e-11 73.6 55 60.0
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.1e-11 73.6 55 61.8
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.1e-11 73.6 55 63.6
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 1.4e-11 73.2 55 61.8
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 1.4e-11 73.2 53 64.2
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 2.4e-11 72.4 55 61.8
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 2.4e-11 72.4 53 60.4
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 2.4e-11 72.4 53 62.3
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 2.4e-11 72.4 53 62.3
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 3.2e-11 72.0 53 62.3
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.2e-11 71.6 105 39.0
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 5.4e-11 71.2 53 62.3
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 5.4e-11 71.2 53 62.3
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.1e-10 69.3 53 60.4
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 2.3e-09 65.9 53 58.5
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 1.1e-08 63.5 59 54.2
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 1.9e-08 62.8 55 54.5
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 3.6e-07 58.5 35 77.1
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.4e-06 56.6 38 65.8
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 6.9e-06 54.3 54 50.0


User provided reference genes

Program Settings