Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb391470 Zea mays HOM05D002285 ORTHO05D004192 3.6e-173 611.7 359 100.0
Zm00001eb085870 Zea mays HOM05D002285 ORTHO05D004192 1.7e-106 390.2 399 67.2
Zm00001eb085940 Zea mays HOM05D002285 ORTHO05D004192 2.3e-106 389.8 399 67.2
Ah.14g085290 Amaranthus hybridus HOM05D002285 ORTHO05D004192 4.3e-81 305.8 392 53.8
Prupe.8G189400 Prunus persica HOM05D002285 ORTHO05D004192 3.4e-78 296.2 394 53.3
Potri.001G035800 Populus trichocarpa HOM05D002285 ORTHO05D004192 2.2e-77 293.5 391 54.2
CAN.G134.32 Capsicum annuum HOM05D002285 ORTHO05D004192 4.9e-77 292.4 393 54.7
PGSC0003DMG400003295 Solanum tuberosum HOM05D002285 ORTHO05D004192 1.9e-76 290.4 394 53.3
Ciclev10011261m.g Citrus clementina HOM05D002285 ORTHO05D004192 3.2e-76 289.7 341 57.2
unitig_8.g3024 Utricularia gibba HOM05D002285 ORTHO05D004192 2.1e-75 287.0 386 52.6
Sopen01g040410 Solanum pennellii HOM05D002285 ORTHO05D004192 7.8e-75 285.0 395 50.6
Thecc.10G132200 Theobroma cacao HOM05D002285 ORTHO05D004192 3.0e-74 283.1 391 53.5
MD10G1150700 Malus domestica HOM05D002285 ORTHO05D004192 8.6e-74 281.6 394 51.5
SEGI_05673 Sequoiadendron giganteum HOM05D002285 ORTHO05D004192 1.1e-73 281.2 390 45.6
Sabra01G0024900 Salix brachista HOM05D002285 ORTHO05D004192 1.9e-73 280.4 391 53.2
Nitab4.5_0007610g0020 Nicotiana tabacum HOM05D002285 ORTHO05D004192 4.7e-72 275.8 392 51.5
Peaxi162Scf00220g00025 Petunia axillaris HOM05D002285 ORTHO05D004192 4.7e-72 275.8 393 52.2
Lj9P652T21 Lonicera japonica HOM05D002285 ORTHO05D004192 1.1e-71 274.6 396 51.8
QL06p001430 Quercus lobata HOM05D002285 ORTHO05D004192 1.1e-71 274.6 392 52.3
Nitab4.5_0004168g0010 Nicotiana tabacum HOM05D002285 ORTHO05D004192 1.4e-71 274.2 339 56.0
Lsat_1_v5_gn_6_76300 Lactuca sativa HOM05D002285 ORTHO05D004192 8.9e-71 271.6 340 56.8
unitig_22.g6247 Utricularia gibba HOM05D002285 ORTHO05D004192 8.9e-71 271.6 386 53.9
Atru.chr8.2275 Acer truncatum HOM05D002285 ORTHO05D004192 1.2e-70 271.2 390 53.3
ECA246G3634 Erigeron canadensis HOM05D002285 ORTHO05D004192 2.0e-70 270.4 388 51.0
AUR62027776 Chenopodium quinoa HOM05D002285 ORTHO05D004192 2.6e-70 270.0 368 54.9
AUR62018932 Chenopodium quinoa HOM05D002285 ORTHO05D004192 4.4e-70 269.2 368 55.2
ECA240G2921 Erigeron canadensis HOM05D002285 ORTHO05D004192 2.9e-69 266.5 391 51.7
Manes.15G172900 Manihot esculenta HOM05D002285 ORTHO05D004192 4.9e-69 265.8 394 50.5
Eucgr.G03185 Eucalyptus grandis HOM05D002285 ORTHO05D004192 1.4e-68 264.2 394 50.8
Hma1.2p1_0233F.1_g098050 Hydrangea macrophylla HOM05D002285 ORTHO05D004192 1.9e-68 263.8 395 50.4
Dinv04986 Davidia involucrata HOM05D002285 ORTHO05D004192 2.4e-68 263.5 392 50.0
MD05G1158000 Malus domestica HOM05D002285 ORTHO05D004192 4.2e-68 262.7 394 48.0
Lj6g0002670 Lotus japonicus HOM05D002285 ORTHO05D004192 9.2e-68 261.5 399 48.6
Migut.I00387 Erythranthe guttata HOM05D002285 ORTHO05D004192 1.2e-67 261.2 399 50.9
CiPaw.06G144200 Carya illinoinensis HOM05D002285 ORTHO05D004192 1.6e-67 260.8 392 50.3
Duzib128G0133 Durio zibethinus HOM05D002285 ORTHO05D004192 2.7e-67 260.0 393 50.4
CSS0011301 Camellia sinensis var. sinensis HOM05D002285 ORTHO05D004192 3.5e-67 259.6 393 51.1
COL.COLO4_32862 Corchorus olitorius HOM05D002285 ORTHO05D004192 3.5e-67 259.6 392 52.6
FAN24G1949 Fragaria x ananassa HOM05D002285 ORTHO05D004192 3.5e-67 259.6 381 50.9
EL10Ac1g01199 Beta vulgaris HOM05D002285 ORTHO05D004192 7.8e-67 258.5 404 50.5
FvH4_2g17680 Fragaria vesca HOM05D002285 ORTHO05D004192 7.8e-67 258.5 381 50.9
FAN15G0402 Fragaria x ananassa HOM05D002285 ORTHO05D004192 7.8e-67 258.5 376 51.1
Lsat_1_v5_gn_3_22761 Lactuca sativa HOM05D002285 ORTHO05D004192 3.9e-66 256.1 364 49.2
CSS0018531 Camellia sinensis var. sinensis HOM05D002285 ORTHO05D004192 6.6e-66 255.4 393 50.4
Gorai.010G212600 Gossypium raimondii HOM05D002285 ORTHO05D004192 3.3e-65 253.1 394 50.8
Gorai.010G212800 Gossypium raimondii HOM05D002285 ORTHO05D004192 4.3e-65 252.7 394 51.0
Duzib114G1054 Durio zibethinus HOM05D002285 ORTHO05D004192 5.6e-65 252.3 393 51.7
Sed0020539 Sechium edule HOM05D002285 ORTHO05D004192 9.6e-65 251.5 392 50.3
HanXRQChr03g0084781 Helianthus annuus HOM05D002285 ORTHO05D004192 1.3e-64 251.1 395 50.6
MSTRG.11320 Avicennia marina HOM05D002285 ORTHO05D004192 1.6e-64 250.8 387 48.8
Gohir.D06G181100 Gossypium hirsutum HOM05D002285 ORTHO05D004192 2.1e-64 250.4 394 50.3
CiPaw.05G050700 Carya illinoinensis HOM05D002285 ORTHO05D004192 2.8e-64 250.0 399 47.6
DCAR_029722 Daucus carota HOM05D002285 ORTHO05D004192 2.8e-64 250.0 388 49.7
PSO541G2777 Papaver somniferum HOM05D002285 ORTHO05D004192 3.6e-64 249.6 407 46.7
PSO675G2493 Papaver somniferum HOM05D002285 ORTHO05D004192 3.6e-64 249.6 407 46.4
Psat7g025360 Pisum sativum HOM05D002285 ORTHO05D004192 4.8e-64 249.2 392 49.0
Aqoxy2G00069 Aquilegia oxysepala HOM05D002285 ORTHO05D004192 8.1e-64 248.4 399 49.4
HanXRQChr07g0198621 Helianthus annuus HOM05D002285 ORTHO05D004192 1.4e-63 247.7 393 50.4
Potri.003G190000 Populus trichocarpa HOM05D002285 ORTHO05D004192 2.4e-63 246.9 391 50.4
ClCG05G009460 Citrullus lanatus HOM05D002285 ORTHO05D004192 3.1e-63 246.5 392 49.5
Sc09g0004710 Simmondsia chinensis HOM05D002285 ORTHO05D004192 3.1e-63 246.5 393 50.4
CANSAT01G1933 Cannabis sativa HOM05D002285 ORTHO05D004192 4.0e-63 246.1 369 52.0
Gohir.A06G172500 Gossypium hirsutum HOM05D002285 ORTHO05D004192 5.3e-63 245.7 393 49.9
CsaV3_3G019250 Cucumis sativus L. HOM05D002285 ORTHO05D004192 6.9e-63 245.4 392 50.0
Ah.09g228410 Amaranthus hybridus HOM05D002285 ORTHO05D004192 9.0e-63 245.0 365 50.1
TAR629G0600 Trochodendron aralioides HOM05D002285 ORTHO05D004192 9.0e-63 245.0 402 48.5
Gohir.A06G172300 Gossypium hirsutum HOM05D002285 ORTHO05D004192 1.2e-62 244.6 397 50.4
Carub.0006s0498 Capsella rubella HOM05D002285 ORTHO05D004192 2.6e-62 243.4 406 45.3
Sabra03G0139800 Salix brachista HOM05D002285 ORTHO05D004192 3.4e-62 243.0 396 48.7
MELO3C019433.2 Cucumis melo HOM05D002285 ORTHO05D004192 4.4e-62 242.7 392 49.0
TAR629G0471 Trochodendron aralioides HOM05D002285 ORTHO05D004192 4.4e-62 242.7 402 48.3
HanXRQChr17g0536391 Helianthus annuus HOM05D002285 ORTHO05D004192 5.8e-62 242.3 341 52.2
Lalb_Chr20g0123651 Lupinus albus HOM05D002285 ORTHO05D004192 5.8e-62 242.3 403 47.4
PGR031G2891 Punica granatum HOM05D002285 ORTHO05D004192 1.3e-61 241.1 394 47.7
vmacro09396 Vaccinium macrocarpon HOM05D002285 ORTHO05D004192 2.9e-61 240.0 394 47.5
Cc07_g11350 Coffea canephora HOM05D002285 ORTHO05D004192 3.8e-61 239.6 396 49.7
Rhsim04G0038900 Rhododendron simsii HOM05D002285 ORTHO05D004192 1.4e-60 237.7 348 50.6
Medtr7g109430 Medicago truncatula HOM05D002285 ORTHO05D004192 1.9e-60 237.3 360 52.5
Pp3c12_1320 Physcomitrium patens HOM05D002285 ORTHO05D004192 1.9e-60 237.3 379 49.6
TWI12G1303 Tripterygium wilfordii HOM05D002285 ORTHO05D004192 2.4e-60 236.9 393 49.4
Medtr3g113680 Medicago truncatula HOM05D002285 ORTHO05D004192 3.2e-60 236.5 356 51.7
Ca_15481_v3 Cicer arietinum L. HOM05D002285 ORTHO05D004192 5.4e-60 235.7 357 51.3
Haze_01812 Corylus avellana HOM05D002285 ORTHO05D004192 7.1e-60 235.3 393 49.1
Zm00001eb391460 Zea mays HOM05D002285 ORTHO05D004192 7.1e-60 235.3 304 64.8
PSO541G2672 Papaver somniferum HOM05D002285 ORTHO05D004192 1.2e-59 234.6 393 49.1
VMungo0540G1611 Vigna mungo HOM05D002285 ORTHO05D004192 1.6e-59 234.2 393 48.3
SGA_v2.0_scaffold19G08809 Striga asiatica HOM05D002285 ORTHO05D004192 2.1e-59 233.8 405 48.6
arahy.Tifrunner.gnm1.ann1.2HCW1A Arachis hypogaea HOM05D002285 ORTHO05D004192 6.0e-59 232.3 356 50.8
arahy.Tifrunner.gnm1.ann1.IXY6UZ Arachis hypogaea HOM05D002285 ORTHO05D004192 6.0e-59 232.3 356 50.8
BcaB04g21135 Brassica carinata HOM05D002285 ORTHO05D004192 7.8e-59 231.9 384 48.7
SGA_v2.0_scaffold25G10982 Striga asiatica HOM05D002285 ORTHO05D004192 7.8e-59 231.9 375 49.3
Actinidia01697 Actinidia chinensis HOM05D002285 ORTHO05D004192 1.3e-58 231.1 393 48.3
ATR1096G014 Amborella trichopoda HOM05D002285 ORTHO05D004192 1.3e-58 231.1 405 48.1
Mapoly0114s0007 Marchantia polymorpha HOM05D002285 ORTHO05D004192 2.3e-58 230.3 458 40.2
CARHR086000 Cardamine hirsuta HOM05D002285 ORTHO05D004192 3.9e-58 229.6 343 52.5
Phvul.006G217200 Phaseolus vulgaris HOM05D002285 ORTHO05D004192 3.9e-58 229.6 346 51.2
A05p37890 Brassica napus HOM05D002285 ORTHO05D004192 5.1e-58 229.2 389 46.3
GSVIVG01012187001 Vitis vinifera HOM05D002285 ORTHO05D004192 5.1e-58 229.2 305 49.8
THA.LOC104826826 Tarenaya hassleriana HOM05D002285 ORTHO05D004192 8.7e-58 228.4 343 51.6
BraA05t22583Z Brassica rapa HOM05D002285 ORTHO05D004192 1.5e-57 227.6 390 46.4
Glyma.12G168800 Glycine max HOM05D002285 ORTHO05D004192 1.9e-57 227.3 388 48.2
Sp3g09680 Schrenkiella parvula HOM05D002285 ORTHO05D004192 3.3e-57 226.5 386 47.4
TWI75G0169 Tripterygium wilfordii HOM05D002285 ORTHO05D004192 3.3e-57 226.5 393 47.1
BcaC05g29373 Brassica carinata HOM05D002285 ORTHO05D004192 5.6e-57 225.7 391 46.0
C05p56680 Brassica napus HOM05D002285 ORTHO05D004192 5.6e-57 225.7 391 46.0
BolC5t34333H Brassica oleracea HOM05D002285 ORTHO05D004192 5.6e-57 225.7 391 46.0
Glyma.08G188900 Glycine max HOM05D002285 ORTHO05D004192 5.6e-57 225.7 388 47.4
SMO367G0595 Selaginella moellendorffii HOM05D002285 ORTHO05D004192 9.6e-57 224.9 391 48.3
PSO675G1354 Papaver somniferum HOM05D002285 ORTHO05D004192 1.6e-56 224.2 356 50.0
THA.LOC104816587 Tarenaya hassleriana HOM05D002285 ORTHO05D004192 1.6e-56 224.2 386 48.4
SHI11339 Sapria himalayana HOM05D002285 ORTHO05D004192 2.1e-56 223.8 349 48.7
Solyc01g096700.4 Solanum lycopersicum HOM05D002285 ORTHO05D004192 2.8e-56 223.4 394 41.1
HPP92_028185 Vanilla planifolia HOM05D002285 ORTHO05D004192 6.2e-56 222.2 346 50.3
Carub.0003s1077 Capsella rubella HOM05D002285 ORTHO05D004192 8.1e-56 221.9 390 47.7
AL3G22990 Arabidopsis lyrata HOM05D002285 ORTHO05D004192 1.4e-55 221.1 373 49.3
Sp6g36800 Schrenkiella parvula HOM05D002285 ORTHO05D004192 1.4e-55 221.1 350 48.6
BcaB06g25623 Brassica carinata HOM05D002285 ORTHO05D004192 2.4e-55 220.3 391 46.0
Oeu004240.2 Olea europaea HOM05D002285 ORTHO05D004192 1.5e-54 217.6 392 39.5
RcHm_v2.0_Chr6g0282661 Rosa chinensis HOM05D002285 ORTHO05D004192 2.0e-54 217.2 232 62.5
AagrBONN_evm.TU.Sc2ySwM_228.101 Anthoceros agrestis HOM05D002285 ORTHO05D004192 3.4e-54 216.5 424 44.1
Oeu050118.1 Olea europaea HOM05D002285 ORTHO05D004192 3.4e-54 216.5 342 41.8
Sed0011384 Sechium edule HOM05D002285 ORTHO05D004192 5.8e-54 215.7 394 46.7
AT3G11450 Arabidopsis thaliana HOM05D002285 ORTHO05D004192 2.9e-53 213.4 390 46.4
Gohir.D06G181300 Gossypium hirsutum HOM05D002285 ORTHO05D004192 2.9e-53 213.4 394 47.2
Thhalv10020260m.g Eutrema salsugineum HOM05D002285 ORTHO05D004192 8.4e-53 211.8 389 46.0
Pp3c14_5130 Physcomitrium patens HOM05D002285 ORTHO05D004192 3.5e-51 206.5 393 46.6
Aa31LG3G4780 Aethionema arabicum HOM05D002285 ORTHO05D004192 4.6e-51 206.1 345 47.8
Aa31LG3G4810 Aethionema arabicum HOM05D002285 ORTHO05D004192 4.6e-51 206.1 345 48.1
EL10Ac1g01198 Beta vulgaris HOM05D002285 ORTHO05D004192 7.9e-51 205.3 230 62.6
CDE08G0904 Ceratophyllum demersum HOM05D002285 ORTHO05D004192 3.7e-48 196.4 401 40.6
CARHR206810 Cardamine hirsuta HOM05D002285 ORTHO05D004192 1.1e-47 194.9 407 42.0
Thhalv10012905m.g Eutrema salsugineum HOM05D002285 ORTHO05D004192 1.1e-47 194.9 404 42.3
Pp3c17_1730 Physcomitrium patens HOM05D002285 ORTHO05D004192 9.0e-47 191.8 423 41.6
A03p37070 Brassica napus HOM05D002285 ORTHO05D004192 1.0e-45 188.3 331 45.6
BraA03t12869Z Brassica rapa HOM05D002285 ORTHO05D004192 7.1e-44 182.2 348 42.5
BolC3t16752H Brassica oleracea HOM05D002285 ORTHO05D004192 1.5e-41 174.5 389 39.8
Psat0s1023g0040 Pisum sativum HOM05D002285 ORTHO05D004192 2.8e-40 170.2 397 33.0
AT5G06110 Arabidopsis thaliana HOM05D002285 ORTHO05D004192 8.2e-40 168.7 403 38.7
BcaB04g18640 Brassica carinata HOM05D002285 ORTHO05D004192 1.1e-39 168.3 384 37.2
Lalb_Chr15g0090711 Lupinus albus HOM05D002285 ORTHO05D004192 1.5e-38 164.5 231 54.1
Zm00001eb391480 Zea mays HOM05D002285 ORTHO05D004192 5.0e-37 159.5 74 98.6
C03p44920 Brassica napus HOM05D002285 ORTHO05D004192 6.5e-37 159.1 346 40.2
RcHm_v2.0_Chr2g0099031 Rosa chinensis HOM05D002285 ORTHO05D004192 2.5e-36 157.1 339 42.5
Nn7g37168 Nelumbo nucifera HOM05D002285 ORTHO05D004192 3.2e-36 156.8 114 66.7
CBR_g1010 Chara braunii HOM05D002285 ORTHO05D004192 2.7e-35 153.7 116 64.7
CDE02G4687 Ceratophyllum demersum HOM05D002285 ORTHO05D004192 7.9e-35 152.1 373 36.5
CAN.G74.14 Capsicum annuum HOM05D002285 ORTHO05D004192 4.5e-30 136.3 106 64.2
Cre01.g003376 Chlamydomonas reinhardtii HOM05D002285 ORTHO05D004192 1.4e-26 124.8 237 43.5
BraA03t09616Z Brassica rapa HOM05D002285 ORTHO05D004192 1.8e-26 124.4 234 47.4
AL6G16060 Arabidopsis lyrata HOM05D002285 ORTHO05D004192 6.7e-26 122.5 204 40.7
BcaB01g05745 Brassica carinata HOM05D002285 ORTHO05D004192 8.8e-26 122.1 232 46.1
A03p02550 Brassica napus HOM05D002285 ORTHO05D004192 2.0e-25 120.9 234 46.6
Os04g0377932 Oryza sativa ssp. japonica HOM05D002285 ORTHO05D004192 5.7e-25 119.4 213 46.9
BcaB01g05741 Brassica carinata HOM05D002285 ORTHO05D004192 1.3e-24 118.2 232 46.6
BcaB01g05971 Brassica carinata HOM05D002285 ORTHO05D004192 2.8e-24 117.1 234 46.2
BcaB01g05973 Brassica carinata HOM05D002285 ORTHO05D004192 2.8e-24 117.1 234 46.2
C03p02880 Brassica napus HOM05D002285 ORTHO05D004192 2.8e-24 117.1 234 46.2
BolC3t12842H Brassica oleracea HOM05D002285 ORTHO05D004192 2.8e-24 117.1 234 46.2
BolC3t12844H Brassica oleracea HOM05D002285 ORTHO05D004192 2.8e-24 117.1 234 46.2
Sabra17G0000200 Salix brachista HOM05D000075 ORTHO05D000073 2.8e-24 117.1 86 72.1
A03p02530 Brassica napus HOM05D002285 ORTHO05D004192 3.7e-24 116.7 234 46.2
BraA03t09614Z Brassica rapa HOM05D002285 ORTHO05D004192 3.7e-24 116.7 234 46.2
FvH4_1g11431 Fragaria vesca HOM05D002285 ORTHO05D004192 1.2e-22 111.7 321 39.6
C03p02870 Brassica napus HOM05D002285 ORTHO05D004192 2.6e-22 110.5 234 45.7
BcaC01g04120 Brassica carinata HOM05D002285 ORTHO05D004192 1.1e-20 105.1 175 44.6
BcaB01g05739 Brassica carinata HOM05D002285 ORTHO05D004192 7.9e-19 99.0 232 44.0
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 7.9e-19 99.0 234 43.2
Cpa.g.sc33.153 Carica papaya HOM05D002285 ORTHO05D004192 7.9e-19 99.0 61 68.9
PRCOL_00001735 Prasinoderma coloniale HOM05D002285 ORTHO05D004192 1.8e-18 97.8 372 37.1
BraA02t07122Z Brassica rapa HOM05D002285 ORTHO05D004192 6.7e-18 95.9 234 32.5
HanXRQChr03g0083661 Helianthus annuus HOM05D002285 ORTHO05D004192 2.0e-17 94.4 81 55.6
Medtr3g114060 Medicago truncatula HOM05D002285 ORTHO05D004192 6.3e-16 89.4 190 37.9
FvH4_1g11450 Fragaria vesca HOM05D002285 ORTHO05D004192 8.2e-16 89.0 317 38.2
FAN19G2233 Fragaria x ananassa HOM05D002285 ORTHO05D004192 1.1e-15 88.6 353 35.4
TPR.G34548 Trifolium pratense HOM05D002285 ORTHO05D004192 1.5e-12 78.2 91 57.1
C03p44910 Brassica napus HOM05D002285 ORTHO05D004192 4.2e-12 76.6 83 54.2
Cfa026155 Carpinus fangiana HOM05D002285 ORTHO05D004192 3.3e-09 67.0 216 38.0
MCO14G048 Micromonas commoda HOM05D002285 ORTHO05D004192 3.5e-06 57.0 225 40.4


User provided reference genes

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