Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb391080 Zea mays HOM05D002756 ORTHO05D002896 1.2e-249 866.3 516 100.0
Zm00001eb023650 Zea mays HOM05D002756 ORTHO05D002896 3.0e-176 622.5 524 79.0
Os10g0562000 Oryza sativa ssp. japonica HOM05D002756 ORTHO05D002896 1.5e-71 274.6 524 50.2
TAR629G0742 Trochodendron aralioides HOM05D002756 ORTHO05D002896 7.6e-23 112.8 569 27.9
Nn6g33844 Nelumbo nucifera HOM05D002756 ORTHO05D002896 2.2e-22 111.3 559 29.5
TAR629G2869 Trochodendron aralioides HOM05D002756 ORTHO05D002896 2.5e-21 107.8 569 27.4
Nn6g33847 Nelumbo nucifera HOM05D002756 ORTHO05D002896 2.7e-20 104.4 559 29.0
HPP92_025695 Vanilla planifolia HOM05D002756 ORTHO05D002896 1.0e-19 102.4 505 31.1
Lalb_Chr09g0329931 Lupinus albus HOM05D002756 ORTHO05D002896 5.1e-19 100.1 544 27.0
TAR375G0301 Trochodendron aralioides HOM05D002756 ORTHO05D002896 2.2e-17 94.7 575 28.9
Haze_07935 Corylus avellana HOM05D002756 ORTHO05D002896 1.1e-16 92.4 527 26.9
PGR042G1682 Punica granatum HOM05D002756 ORTHO05D002896 2.4e-16 91.3 511 27.2
Aqoxy3G02766 Aquilegia oxysepala HOM05D002756 ORTHO05D002896 5.3e-16 90.1 570 25.6
HPP92_025690 Vanilla planifolia HOM05D002756 ORTHO05D002896 1.5e-15 88.6 501 31.1
Gohir.D12G217500 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.0e-15 88.2 520 26.9
PSO732G0525 Papaver somniferum HOM05D002756 ORTHO05D002896 3.4e-15 87.4 602 26.7
Gohir.A12G214900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 4.5e-15 87.0 513 28.3
CiPaw.12G049400 Carya illinoinensis HOM05D002756 ORTHO05D002896 1.0e-14 85.9 580 26.9
Gorai.008G233100 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.0e-14 85.9 518 26.6
Eucgr.E00399 Eucalyptus grandis HOM05D002756 ORTHO05D002896 1.3e-14 85.5 557 27.3
Cfa012698 Carpinus fangiana HOM05D002756 ORTHO05D002896 1.7e-14 85.1 542 28.0
Lj4g0006676 Lotus japonicus HOM05D002756 ORTHO05D002896 1.1e-13 82.4 549 25.0
Cc08_g12030 Coffea canephora HOM05D002756 ORTHO05D002896 2.5e-13 81.3 541 26.4
HanXRQChr17g0549241 Helianthus annuus HOM05D002756 ORTHO05D002896 2.5e-13 81.3 513 26.3
ClCG10G002500 Citrullus lanatus HOM05D002756 ORTHO05D002896 3.2e-13 80.9 579 26.9
Atru.chr9.1260 Acer truncatum HOM05D002756 ORTHO05D002896 9.4e-13 79.3 548 29.0
Sc07g0009180 Simmondsia chinensis HOM05D002756 ORTHO05D002896 9.4e-13 79.3 593 26.6
Ciclev10019703m.g Citrus clementina HOM05D002756 ORTHO05D002896 1.2e-12 79.0 546 26.9
CDE02G3283 Ceratophyllum demersum HOM05D002756 ORTHO05D002896 1.6e-12 78.6 221 30.3
FAN18G1828 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.6e-12 78.6 570 26.7
Solyc08g078290.1 Solanum lycopersicum HOM05D002756 ORTHO05D002896 1.6e-12 78.6 510 26.3
Duzib068G0659 Durio zibethinus HOM05D002756 ORTHO05D002896 2.1e-12 78.2 577 27.4
BolC8t48410H Brassica oleracea HOM05D002756 ORTHO05D002896 2.7e-12 77.8 496 28.8
CANSAT21G1520 Cannabis sativa HOM05D002756 ORTHO05D002896 2.7e-12 77.8 540 26.1
BcaC07g38020 Brassica carinata HOM05D002756 ORTHO05D002896 7.9e-12 76.3 496 28.0
Potri.003G079900 Populus trichocarpa HOM05D002756 ORTHO05D002896 7.9e-12 76.3 270 29.3
PSO675G5676 Papaver somniferum HOM05D002756 ORTHO05D002896 1.0e-11 75.9 598 25.9
Sabra03G0049800 Salix brachista HOM05D002756 ORTHO05D002896 1.0e-11 75.9 580 26.7
vmacro00014 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 1.8e-11 75.1 524 28.4
CiPaw.11G082800 Carya illinoinensis HOM05D002756 ORTHO05D002896 2.3e-11 74.7 573 26.2
Duzib205G1850 Durio zibethinus HOM05D002756 ORTHO05D002896 2.3e-11 74.7 266 29.3
Lalb_Chr05g0221081 Lupinus albus HOM05D002756 ORTHO05D002896 2.3e-11 74.7 584 24.7
Manes.02G041900 Manihot esculenta HOM05D002756 ORTHO05D002896 3.0e-11 74.3 570 26.0
TWI81G0105 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 3.9e-11 73.9 542 24.7
GSVIVG01005822001 Vitis vinifera HOM05D002756 ORTHO05D002896 3.9e-11 73.9 518 28.4
FvH4_5g19610 Fragaria vesca HOM05D002756 ORTHO05D002896 5.1e-11 73.6 570 23.9
CSS0004447 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 8.8e-11 72.8 564 28.0
Thecc.01G392600 Theobroma cacao HOM05D002756 ORTHO05D002896 8.8e-11 72.8 563 25.8
MD04G1061300 Malus domestica HOM05D002756 ORTHO05D002896 1.5e-10 72.0 580 28.8
Oeu017053.1 Olea europaea HOM05D002756 ORTHO05D002896 2.0e-10 71.6 560 26.6
RcHm_v2.0_Chr7g0204301 Rosa chinensis HOM05D002756 ORTHO05D002896 2.0e-10 71.6 570 26.7
THA.LOC104807911 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 2.0e-10 71.6 532 26.5
PSO782G0082 Papaver somniferum HOM05D002756 ORTHO05D002896 2.5e-10 71.2 234 32.1
SEGI_18028 Sequoiadendron giganteum HOM05D002756 ORTHO05D002896 2.5e-10 71.2 253 29.6
FAN13G0091 Fragaria x ananassa HOM05D002756 ORTHO05D002896 3.3e-10 70.9 571 25.2
TPR.G37630 Trifolium pratense HOM05D002756 ORTHO05D002896 4.3e-10 70.5 528 28.0
PSO063G5636 Papaver somniferum HOM05D002756 ORTHO05D002896 5.7e-10 70.1 234 31.6
Psat4g073480 Pisum sativum HOM05D002756 ORTHO05D002896 5.7e-10 70.1 300 29.0
FAN04G0448 Fragaria x ananassa HOM05D002756 ORTHO05D002896 9.7e-10 69.3 572 26.6
Ah.12g054420 Amaranthus hybridus HOM05D002756 ORTHO05D002896 1.3e-09 68.9 642 24.9
Sopen08g026790 Solanum pennellii HOM05D002756 ORTHO05D002896 1.3e-09 68.9 515 25.6
SGA_v2.0_scaffold199G41225 Striga asiatica HOM05D002756 ORTHO05D002896 1.7e-09 68.6 528 27.8
Medtr4g100530 Medicago truncatula HOM05D002756 ORTHO05D002896 2.2e-09 68.2 525 24.6
Thhalv10024963m.g Eutrema salsugineum HOM05D002756 ORTHO05D002896 2.8e-09 67.8 223 31.8
Glyma.18G253700 Glycine max HOM05D002756 ORTHO05D002896 3.7e-09 67.4 159 37.1
CAN.G1178.4 Capsicum annuum HOM05D002756 ORTHO05D002896 4.8e-09 67.0 549 25.9
MELO3C013922.2 Cucumis melo HOM05D002756 ORTHO05D002896 4.8e-09 67.0 529 27.4
EL10Ac5g12331 Beta vulgaris HOM05D002756 ORTHO05D002896 6.3e-09 66.6 649 25.1
Sed0017596 Sechium edule HOM05D002756 ORTHO05D002896 1.1e-08 65.9 566 23.9
Glyma.09G241900 Glycine max HOM05D002756 ORTHO05D002896 1.4e-08 65.5 158 37.3
Duzib138G1759 Durio zibethinus HOM05D002756 ORTHO05D002896 1.8e-08 65.1 552 26.1
VMungo1383G3385 Vigna mungo HOM05D002756 ORTHO05D002896 1.8e-08 65.1 156 35.9
Lalb_Chr16g0386561 Lupinus albus HOM05D002756 ORTHO05D002896 2.4e-08 64.7 179 33.0
Nitab4.5_0002601g0020 Nicotiana tabacum HOM05D002756 ORTHO05D002896 3.1e-08 64.3 555 25.9
Sabra01G0124600 Salix brachista HOM05D002756 ORTHO05D002896 3.1e-08 64.3 565 25.8
Zm00001eb074850 Zea mays HOM05D022547 ORTHO05D025999 3.1e-08 64.3 187 33.2
Ciclev10024461m.g Citrus clementina HOM05D001866 ORTHO05D001915 4.1e-08 63.9 244 29.5
TWI59G1099 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 4.1e-08 63.9 271 29.2
Nitab4.5_0007283g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 5.3e-08 63.5 558 25.6
Phvul.008G045300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 5.3e-08 63.5 65 58.5
unitig_744.g24633 Utricularia gibba HOM05D002756 ORTHO05D002896 5.3e-08 63.5 224 27.2
Dinv21670 Davidia involucrata HOM05D002756 ORTHO05D002896 6.9e-08 63.2 248 27.0
Dinv44072 Davidia involucrata HOM05D001866 ORTHO05D002896 6.9e-08 63.2 240 28.3
Potri.001G155000 Populus trichocarpa HOM05D002756 ORTHO05D002896 6.9e-08 63.2 553 28.9
QL12p010923 Quercus lobata HOM05D002756 ORTHO05D002896 6.9e-08 63.2 598 27.4
QL12p011144 Quercus lobata HOM05D002756 ORTHO05D002896 9.1e-08 62.8 598 27.4
Gorai.N024700 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.2e-07 62.4 240 30.0
AUR62007124 Chenopodium quinoa HOM05D002756 ORTHO05D002896 1.5e-07 62.0 304 33.2
PGSC0003DMG400026237 Solanum tuberosum HOM05D002756 ORTHO05D002896 2.0e-07 61.6 520 24.2
AUR62019993 Chenopodium quinoa HOM05D002756 ORTHO05D002896 2.6e-07 61.2 596 25.2
MD07G1103700 Malus domestica HOM05D002756 ORTHO05D002896 2.6e-07 61.2 71 49.3
Rhsim11G0050900 Rhododendron simsii HOM05D002756 ORTHO05D002896 3.4e-07 60.8 487 27.3
arahy.Tifrunner.gnm1.ann1.QKY2Z8 Arachis hypogaea HOM05D002756 ORTHO05D002896 5.9e-07 60.1 64 54.7
Carub.0007s2697 Capsella rubella HOM05D002756 ORTHO05D002896 5.9e-07 60.1 61 57.4
Sp7g17320 Schrenkiella parvula HOM05D002756 ORTHO05D002896 5.9e-07 60.1 522 27.2
arahy.Tifrunner.gnm1.ann1.IYGI6Y Arachis hypogaea HOM05D002756 ORTHO05D002896 7.7e-07 59.7 64 54.7
BraA01t01971Z Brassica rapa HOM05D002756 ORTHO05D002896 7.7e-07 59.7 228 28.9
BraA08t33260Z Brassica rapa HOM05D002756 ORTHO05D002896 7.7e-07 59.7 494 25.5
Hma1.2p1_1335F.1_g276370 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 1.0e-06 59.3 541 25.3
FAN08G2407 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.3e-06 58.9 570 23.5
Thhalv10005806m.g Eutrema salsugineum HOM05D002756 ORTHO05D002896 1.7e-06 58.5 61 55.7
QL04p030920 Quercus lobata HOM05D002756 ORTHO05D002896 1.7e-06 58.5 63 54.0
THA.LOC104802490 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 1.7e-06 58.5 79 50.6
Thecc.03G246800 Theobroma cacao HOM05D002756 ORTHO05D002896 1.7e-06 58.5 569 26.0
TPR.G12184 Trifolium pratense HOM05D002756 ORTHO05D002896 1.7e-06 58.5 61 54.1
CANSAT78G0750 Cannabis sativa HOM05D002756 ORTHO05D002896 2.2e-06 58.2 168 32.1
Hma1.2p1_1196F.1_g266030 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 2.2e-06 58.2 541 25.1
A08p12710 Brassica napus HOM05D002756 ORTHO05D002896 2.9e-06 57.8 494 24.9
MD02G1216600 Malus domestica HOM05D002756 ORTHO05D002896 2.9e-06 57.8 86 44.2
PGR042G0175 Punica granatum HOM05D002756 ORTHO05D002896 2.9e-06 57.8 298 28.5
A04p01640 Brassica napus HOM05D002756 ORTHO05D002896 3.8e-06 57.4 55 58.2
BraA04t15888Z Brassica rapa HOM05D002756 ORTHO05D002896 3.8e-06 57.4 55 58.2
DCAR_008518 Daucus carota HOM05D002756 ORTHO05D002896 3.8e-06 57.4 483 25.3
Lj1g0002162 Lotus japonicus HOM05D002756 ORTHO05D002896 3.8e-06 57.4 285 26.0
Medtr7g007880 Medicago truncatula HOM05D002756 ORTHO05D002896 3.8e-06 57.4 62 53.2
CSS0042834 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 5.0e-06 57.0 249 27.7
AL5G42620 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 6.5e-06 56.6 71 50.7
Duzib084G0904 Durio zibethinus HOM05D002756 ORTHO05D002896 6.5e-06 56.6 527 24.5
Rhsim01G0138600 Rhododendron simsii HOM05D002756 ORTHO05D002896 6.5e-06 56.6 65 50.8
Lj8C270T8 Lonicera japonica HOM05D002756 ORTHO05D002896 8.5e-06 56.2 551 25.8


User provided reference genes

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