Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 6.3e-100 367.5 189 100.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.8e-92 342.0 216 82.9
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 7.7e-82 307.4 215 74.9
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.2e-63 246.9 213 61.0
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.8e-63 245.7 213 60.6
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 6.2e-63 244.6 215 58.6
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 8.0e-63 244.2 212 60.4
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 8.0e-63 244.2 212 59.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.4e-62 243.4 212 60.4
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.4e-62 243.4 213 59.6
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 3.1e-62 242.3 213 57.7
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 5.2e-62 241.5 215 57.2
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 5.2e-62 241.5 213 58.2
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 5.2e-62 241.5 213 58.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 6.8e-62 241.1 213 58.7
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.2e-61 240.4 213 57.3
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.0e-61 239.6 213 57.3
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.4e-61 238.8 213 59.2
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 3.4e-61 238.8 216 57.9
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 4.4e-61 238.4 214 58.9
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.8e-61 238.0 213 56.3
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 5.8e-61 238.0 215 58.6
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 5.8e-61 238.0 214 58.9
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 5.8e-61 238.0 214 58.9
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.5e-61 237.7 214 58.4
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.5e-61 237.7 214 58.4
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.2e-60 236.1 212 59.9
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 4.9e-60 235.0 213 56.8
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 6.4e-60 234.6 213 58.7
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 6.4e-60 234.6 212 56.1
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 8.3e-60 234.2 217 57.1
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 8.3e-60 234.2 212 59.4
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.3e-60 234.2 212 59.4
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 8.3e-60 234.2 213 59.2
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.1e-59 233.8 214 57.9
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.1e-59 233.8 212 59.4
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.4e-59 233.4 212 59.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.9e-59 233.0 213 56.3
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 3.2e-59 232.3 213 59.6
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 3.2e-59 232.3 213 59.6
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.2e-59 232.3 211 58.3
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 4.1e-59 231.9 213 56.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 4.1e-59 231.9 213 56.8
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 4.1e-59 231.9 211 57.3
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.4e-59 231.5 213 56.8
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 5.4e-59 231.5 211 57.3
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 5.4e-59 231.5 214 57.5
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.0e-59 231.1 213 56.8
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 7.0e-59 231.1 213 56.8
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 9.2e-59 230.7 211 57.8
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 9.2e-59 230.7 213 57.3
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-58 230.3 211 56.9
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.2e-58 230.3 213 56.8
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.6e-58 229.9 213 55.4
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.6e-58 229.9 214 56.5
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.6e-58 229.9 209 58.4
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.1e-58 229.6 213 56.3
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 2.7e-58 229.2 213 55.9
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-58 229.2 213 55.9
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-58 229.2 213 55.9
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 2.7e-58 229.2 213 55.4
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.5e-58 228.8 214 54.7
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.5e-58 228.8 213 56.3
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 3.5e-58 228.8 211 57.3
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 4.6e-58 228.4 213 55.4
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 4.6e-58 228.4 213 55.4
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 4.6e-58 228.4 211 57.8
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 6.0e-58 228.0 212 57.1
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 6.0e-58 228.0 211 55.9
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 6.0e-58 228.0 213 55.9
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 6.0e-58 228.0 214 57.0
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 7.8e-58 227.6 211 56.9
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.0e-57 227.3 214 57.9
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.0e-57 227.3 211 55.9
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.0e-57 227.3 213 54.9
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.3e-57 226.9 213 55.4
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.3e-57 226.9 213 54.0
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.7e-57 226.5 214 57.9
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.7e-57 226.5 213 56.8
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.3e-57 226.1 211 56.9
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 3.0e-57 225.7 211 55.0
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 3.0e-57 225.7 211 55.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 3.0e-57 225.7 214 55.1
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 3.0e-57 225.7 214 54.7
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 3.9e-57 225.3 211 56.9
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.1e-57 224.9 211 55.9
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 5.1e-57 224.9 211 54.5
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 6.6e-57 224.6 211 55.0
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 8.6e-57 224.2 211 55.9
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 8.6e-57 224.2 211 55.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 8.6e-57 224.2 211 55.0
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.1e-56 223.8 214 58.4
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.5e-56 223.4 214 58.4
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 2.5e-56 222.6 213 55.4
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 3.3e-56 222.2 214 57.5
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.6e-56 221.5 187 63.6
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 5.6e-56 221.5 214 58.4
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 7.3e-56 221.1 227 52.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 9.5e-56 220.7 214 57.5
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 2.8e-55 219.2 213 53.5
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 2.8e-55 219.2 198 58.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 4.7e-55 218.4 214 53.7
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 8.1e-55 217.6 204 55.9
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.4e-54 216.9 198 56.6
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.1e-54 215.7 213 53.1
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.2e-53 213.8 197 59.4
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.0e-53 213.0 201 55.7
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.4e-53 212.2 201 54.7
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 7.5e-53 211.1 205 53.2
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.3e-52 210.3 204 52.0
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.7e-52 209.9 211 53.6
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.2e-52 209.5 200 55.5
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 2.2e-52 209.5 224 50.0
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 6.4e-52 208.0 215 51.6
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 6.4e-52 208.0 218 52.8
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 8.3e-52 207.6 205 51.7
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 2.4e-51 206.1 198 55.1
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.4e-51 206.1 212 54.7
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.4e-51 206.1 199 53.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 2.4e-51 206.1 197 55.3
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 3.2e-51 205.7 201 51.7
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 4.1e-51 205.3 208 52.9
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 4.1e-51 205.3 208 52.9
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.1e-51 205.3 210 56.7
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.4e-51 204.9 212 54.7
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 5.4e-51 204.9 198 53.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.2e-50 203.8 198 53.5
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-50 202.6 201 53.7
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 4.6e-50 201.8 214 53.7
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.7e-49 199.9 211 53.6
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-47 193.7 250 47.6
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 4.7e-47 191.8 235 46.8
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 2.6e-45 186.0 186 54.3
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.1e-43 180.6 211 49.3
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.9e-43 179.9 208 51.4
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.7e-41 173.3 193 49.2
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.9e-41 172.2 212 50.5
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 5.1e-41 171.8 172 52.9
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.5e-40 170.2 213 50.2
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.6e-40 168.3 211 45.0
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 4.7e-39 165.2 211 46.4
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 8.1e-39 164.5 232 40.5
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.1e-38 164.1 211 46.9
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.0e-38 162.2 211 45.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 5.3e-38 161.8 205 47.3
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.9e-36 156.0 198 46.0
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 1.1e-35 154.1 198 47.0
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 5.4e-35 151.8 162 53.7
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 7.8e-34 147.9 180 47.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.0e-33 147.5 214 42.1
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 3.0e-33 146.0 156 51.9
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 3.9e-33 145.6 106 71.7
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 5.1e-33 145.2 159 49.1
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.1e-31 139.8 186 42.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 9.9e-29 131.0 150 50.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.7e-28 130.2 95 66.3
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 7.9e-26 121.3 234 35.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-24 117.1 108 61.1
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.4e-24 114.8 156 46.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 8.1e-23 111.3 169 44.4
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.8e-22 110.2 242 34.7
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 3.1e-22 109.4 172 41.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.8e-17 93.6 222 33.3
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 6.7e-17 91.7 106 49.1
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.6e-15 87.0 93 49.5
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.1e-15 86.7 64 62.5
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.8e-14 83.6 91 46.2
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 2.4e-14 83.2 68 61.8
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 5.8e-13 78.6 192 31.8
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 4.2e-11 72.4 40 85.0
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.8e-09 67.0 76 47.4
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 8.7e-09 64.7 70 47.1
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 9.0e-06 54.7 66 48.5


User provided reference genes

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