Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 1.4e-99 366.3 186 100.0
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.2e-65 252.7 135 94.8
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 8.2e-60 234.2 140 87.1
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 8.8e-46 187.6 103 93.2
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 6.3e-36 154.8 84 94.0
Zm00001eb267420 Zea mays HOM05D003706 ORTHO05D446275 1.4e-35 153.7 77 97.4
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 9.2e-19 97.8 95 56.8
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 1.6e-18 97.1 95 56.8
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 4.5e-18 95.5 110 52.7
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 4.5e-18 95.5 87 58.6
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 1.0e-17 94.4 100 53.0
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.0e-17 94.4 93 57.0
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 1.3e-17 94.0 85 58.8
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 1.3e-17 94.0 88 56.8
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.7e-17 93.6 93 57.0
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.7e-17 93.6 96 55.2
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 1.7e-17 93.6 85 58.8
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 1.7e-17 93.6 85 58.8
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.7e-17 93.6 110 50.9
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.3e-17 93.2 93 58.1
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 2.9e-17 92.8 87 58.6
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 5.0e-17 92.0 84 60.7
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 5.0e-17 92.0 118 48.3
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 5.0e-17 92.0 102 54.9
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 6.6e-17 91.7 95 54.7
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 6.6e-17 91.7 85 56.5
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 8.6e-17 91.3 98 53.1
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 8.6e-17 91.3 92 56.5
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 1.1e-16 90.9 87 56.3
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.1e-16 90.9 87 56.3
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 1.1e-16 90.9 98 52.0
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.1e-16 90.9 96 54.2
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.1e-16 90.9 93 55.9
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 1.5e-16 90.5 95 56.8
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.5e-16 90.5 85 58.8
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 1.9e-16 90.1 120 45.8
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 1.9e-16 90.1 87 56.3
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 2.5e-16 89.7 96 53.1
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.5e-16 89.7 88 54.5
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.5e-16 89.7 88 54.5
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 2.5e-16 89.7 93 55.9
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 2.5e-16 89.7 111 46.8
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 2.5e-16 89.7 87 56.3
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 3.3e-16 89.4 84 57.1
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 3.3e-16 89.4 87 56.3
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 3.3e-16 89.4 87 54.0
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 4.3e-16 89.0 84 58.3
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 5.6e-16 88.6 94 55.3
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 5.6e-16 88.6 95 52.6
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 7.3e-16 88.2 85 55.3
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 7.3e-16 88.2 85 55.3
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 7.3e-16 88.2 93 53.8
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 9.5e-16 87.8 96 53.1
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 9.5e-16 87.8 85 55.3
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 1.2e-15 87.4 84 57.1
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 1.2e-15 87.4 84 57.1
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 1.2e-15 87.4 84 57.1
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 1.2e-15 87.4 84 57.1
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 1.2e-15 87.4 92 55.4
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 2.1e-15 86.7 85 55.3
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.1e-15 86.7 85 55.3
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 2.1e-15 86.7 100 51.0
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 2.1e-15 86.7 84 58.3
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 2.1e-15 86.7 84 58.3
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.1e-15 86.7 87 49.4
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.1e-15 86.7 92 54.3
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 2.8e-15 86.3 95 54.7
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 2.8e-15 86.3 98 52.0
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 2.8e-15 86.3 87 55.2
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 3.6e-15 85.9 84 56.0
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 3.6e-15 85.9 84 56.0
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 3.6e-15 85.9 84 54.8
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.6e-15 85.9 92 53.3
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.6e-15 85.9 92 53.3
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 3.6e-15 85.9 85 56.5
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 3.6e-15 85.9 85 58.8
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 4.7e-15 85.5 85 52.9
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 4.7e-15 85.5 85 52.9
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 4.7e-15 85.5 95 53.7
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 4.7e-15 85.5 85 54.1
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 6.1e-15 85.1 85 52.9
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 6.1e-15 85.1 106 49.1
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 6.1e-15 85.1 106 49.1
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 8.0e-15 84.7 84 57.1
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.0e-15 84.7 88 51.1
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.0e-15 84.7 88 51.1
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 8.0e-15 84.7 84 54.8
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 8.0e-15 84.7 84 56.0
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 8.0e-15 84.7 85 56.5
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 8.0e-15 84.7 92 52.2
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 8.0e-15 84.7 98 52.0
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 8.0e-15 84.7 101 50.5
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 8.0e-15 84.7 87 49.4
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 1.0e-14 84.3 95 51.6
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.0e-14 84.3 96 47.9
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.0e-14 84.3 85 54.1
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.0e-14 84.3 85 54.1
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.0e-14 84.3 86 57.0
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 1.0e-14 84.3 78 57.7
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 1.0e-14 84.3 84 53.6
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.0e-14 84.3 96 53.1
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 1.0e-14 84.3 101 50.5
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 1.0e-14 84.3 84 56.0
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 1.4e-14 84.0 101 50.5
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.4e-14 84.0 106 48.1
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 1.8e-14 83.6 97 51.5
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 1.8e-14 83.6 85 52.9
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.8e-14 83.6 86 50.0
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.3e-14 83.2 84 54.8
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 2.3e-14 83.2 103 48.5
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 3.1e-14 82.8 93 52.7
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 3.1e-14 82.8 84 54.8
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 3.1e-14 82.8 87 52.9
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 3.1e-14 82.8 84 56.0
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 4.0e-14 82.4 80 56.2
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 5.2e-14 82.0 96 47.9
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 5.2e-14 82.0 78 59.0
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 5.2e-14 82.0 83 54.2
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 5.2e-14 82.0 84 50.0
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 6.8e-14 81.6 93 51.6
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 6.8e-14 81.6 85 51.8
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 6.8e-14 81.6 90 48.9
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 8.9e-14 81.3 84 53.6
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 8.9e-14 81.3 91 51.6
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 1.2e-13 80.9 84 53.6
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 1.2e-13 80.9 84 53.6
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 1.2e-13 80.9 84 53.6
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 1.2e-13 80.9 84 53.6
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.2e-13 80.9 84 53.6
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 1.2e-13 80.9 85 52.9
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.2e-13 80.9 96 50.0
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.2e-13 80.9 91 50.5
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 1.5e-13 80.5 84 53.6
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 2.0e-13 80.1 90 51.1
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.0e-13 80.1 84 54.8
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 2.0e-13 80.1 84 53.6
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 2.6e-13 79.7 93 51.6
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 2.6e-13 79.7 106 47.2
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.6e-13 79.7 96 46.9
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 4.4e-13 79.0 78 56.4
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 5.8e-13 78.6 84 52.4
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 7.5e-13 78.2 84 51.2
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 9.8e-13 77.8 110 42.7
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 9.8e-13 77.8 89 50.6
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.3e-12 77.4 84 52.4
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 2.9e-12 76.3 93 48.4
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 2.9e-12 76.3 84 50.0
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 2.9e-12 76.3 84 50.0
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 2.9e-12 76.3 84 50.0
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 2.9e-12 76.3 87 51.7
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 4.9e-12 75.5 93 48.4
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 6.4e-12 75.1 107 40.2
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.1e-11 74.3 79 53.2
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.9e-11 73.6 102 43.1
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 1.2e-10 70.9 71 53.5
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 2.0e-10 70.1 83 48.2
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 2.3e-09 66.6 56 55.4
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 3.9e-09 65.9 114 40.4
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 4.3e-08 62.4 98 42.9
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 2.1e-07 60.1 83 39.8
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 6.2e-07 58.5 93 39.8


User provided reference genes

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