Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 4.7e-158 561.2 301 100.0
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 8.6e-59 231.5 231 64.9
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 1.5e-34 151.0 328 41.5
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.8e-30 136.3 251 41.0
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 6.4e-30 135.6 232 41.4
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 8.4e-30 135.2 283 35.7
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 4.2e-29 132.9 232 40.5
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 5.4e-29 132.5 339 38.6
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 1.2e-28 131.3 239 41.8
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 7.8e-28 128.6 307 36.5
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 1.0e-27 128.3 264 38.6
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 3.9e-27 126.3 266 39.1
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 6.6e-27 125.6 259 37.5
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.9e-26 124.0 307 35.8
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 4.3e-26 122.9 264 35.6
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 7.3e-26 122.1 264 36.4
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 1.3e-25 121.3 277 37.5
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 4.8e-25 119.4 271 36.2
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 6.2e-25 119.0 244 37.7
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 3.1e-24 116.7 210 41.0
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 3.1e-24 116.7 238 36.1
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 4.0e-24 116.3 209 43.1
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 4.0e-24 116.3 238 36.1
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 5.3e-24 115.9 253 37.5
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 6.9e-24 115.5 226 39.8
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 9.0e-24 115.2 185 43.8
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 9.0e-24 115.2 308 34.7
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 9.0e-24 115.2 147 47.6
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.2e-23 114.8 305 34.4
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 1.2e-23 114.8 197 42.6
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 1.5e-23 114.4 286 37.4
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 1.5e-23 114.4 233 39.9
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.0e-23 114.0 235 38.3
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 3.4e-23 113.2 319 34.5
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 4.5e-23 112.8 259 34.7
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 4.5e-23 112.8 169 45.6
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 7.6e-23 112.1 173 46.8
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 7.6e-23 112.1 289 33.9
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 1.3e-22 111.3 250 37.6
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 2.2e-22 110.5 276 36.6
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 3.8e-22 109.8 158 44.9
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 6.4e-22 109.0 104 60.6
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 6.4e-22 109.0 147 46.3
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 8.4e-22 108.6 170 44.7
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 1.1e-21 108.2 158 43.7
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 1.9e-21 107.5 163 47.9
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.9e-21 107.5 312 32.7
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.9e-21 107.5 312 32.7
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 1.9e-21 107.5 246 38.2
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 2.4e-21 107.1 267 38.6
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 2.4e-21 107.1 263 36.5
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 3.2e-21 106.7 165 44.2
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 3.2e-21 106.7 165 44.2
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 5.4e-21 105.9 172 45.3
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 5.4e-21 105.9 260 34.6
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 5.4e-21 105.9 250 36.4
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 7.1e-21 105.5 165 44.2
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 9.3e-21 105.1 280 36.8
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 1.6e-20 104.4 258 33.7
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 3.5e-20 103.2 175 40.0
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 4.6e-20 102.8 256 34.4
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 6.0e-20 102.4 165 47.3
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 6.0e-20 102.4 192 39.6
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.9e-20 102.1 278 34.5
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 1.0e-19 101.7 265 35.5
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 1.0e-19 101.7 265 35.5
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 1.8e-19 100.9 173 40.5
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 1.8e-19 100.9 319 32.6
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 2.3e-19 100.5 301 33.6
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 3.0e-19 100.1 266 33.5
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 6.7e-19 99.0 323 30.7
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 6.7e-19 99.0 257 37.7
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 8.7e-19 98.6 242 36.0
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 1.5e-18 97.8 307 33.9
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 1.5e-18 97.8 186 38.2
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 1.9e-18 97.4 242 36.4
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 1.9e-18 97.4 300 31.7
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.9e-18 97.4 155 45.8
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.9e-18 97.4 95 57.9
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.5e-18 97.1 153 47.1
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 3.3e-18 96.7 166 42.2
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 5.6e-18 95.9 138 49.3
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 7.4e-18 95.5 138 49.3
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 7.4e-18 95.5 307 33.2
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 9.6e-18 95.1 256 33.2
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 9.6e-18 95.1 209 37.3
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 9.6e-18 95.1 162 43.8
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 9.6e-18 95.1 252 35.7
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.3e-17 94.7 199 36.2
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 1.6e-17 94.4 299 33.1
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 1.6e-17 94.4 299 33.1
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 1.6e-17 94.4 299 33.1
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 1.6e-17 94.4 110 53.6
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 1.6e-17 94.4 153 45.8
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 2.1e-17 94.0 148 43.2
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 3.7e-17 93.2 205 38.5
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 1.1e-16 91.7 240 37.1
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 1.1e-16 91.7 166 41.0
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.4e-16 91.3 90 55.6
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 1.8e-16 90.9 247 35.2
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 2.4e-16 90.5 155 42.6
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 1.5e-15 87.8 92 59.8
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 1.5e-15 87.8 160 41.2
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 3.4e-15 86.7 79 60.8
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 5.8e-15 85.9 206 38.3
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 9.9e-15 85.1 153 41.8
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 1.3e-14 84.7 145 43.4
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 1.3e-14 84.7 187 37.4
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 3.8e-14 83.2 104 50.0
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 8.4e-14 82.0 60 65.0
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 3.2e-13 80.1 190 35.8
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 1.6e-12 77.8 72 56.9
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 2.7e-12 77.0 292 30.8
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.0e-11 75.1 127 41.7
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.8e-11 74.3 56 64.3
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.8e-11 74.3 56 64.3
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 5.1e-11 72.8 120 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1662 Anthoceros agrestis HOM05D015270 ORTHO05D016504 9.0e-08 62.0 265 29.4


User provided reference genes

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