Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb386420 Zea mays HOM05D000710 ORTHO05D000336 7.0e-56 220.3 107 100.0
Zm00001eb386430 Zea mays HOM05D000710 ORTHO05D000336 2.5e-45 185.3 106 86.8
Zm00001eb386440 Zea mays HOM05D000710 ORTHO05D000336 5.4e-24 114.4 57 94.7
Zm00001eb354560 Zea mays HOM05D000710 ORTHO05D000336 1.0e-14 83.6 92 47.8
Os02g0317300 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 1.3e-12 76.6 82 46.3
Os08g0193900 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 2.1e-12 75.9 83 49.4
Os08g0193600 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 6.2e-12 74.3 81 49.4
Os02g0317500 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 1.4e-11 73.2 89 41.6
Os08g0195800 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 1.4e-11 73.2 84 47.6
Zm00001eb413520 Zea mays HOM05D000710 ORTHO05D000336 1.4e-11 73.2 89 44.9
Zm00001eb417460 Zea mays HOM05D000710 ORTHO05D000336 5.3e-11 71.2 96 40.6
Os08g0193200 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 9.0e-11 70.5 89 44.9
Os08g0193300 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 3.4e-10 68.6 93 44.1
Os08g0195900 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 3.4e-10 68.6 85 43.5
Os08g0193500 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 4.5e-10 68.2 96 41.7
Eucgr.E02467 Eucalyptus grandis HOM05D000710 ORTHO05D000336 1.7e-09 66.2 88 42.0
Lj2A324T64 Lonicera japonica HOM05D000710 ORTHO05D000336 2.9e-09 65.5 86 39.5
Os08g0194000 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 6.5e-09 64.3 89 43.8
Nn5g30829 Nelumbo nucifera HOM05D000710 ORTHO05D000336 8.4e-09 63.9 91 39.6
PSO541G4648 Papaver somniferum HOM05D000710 ORTHO05D000336 8.4e-09 63.9 82 41.5
arahy.Tifrunner.gnm1.ann1.T21N8D Arachis hypogaea HOM05D000710 ORTHO05D000336 1.4e-08 63.2 92 35.9
Os08g0195000 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 1.4e-08 63.2 86 40.7
PSO675G4530 Papaver somniferum HOM05D000710 ORTHO05D000336 1.4e-08 63.2 89 41.6
Actinidia13464 Actinidia chinensis HOM05D000710 ORTHO05D000336 2.5e-08 62.4 90 41.1
Glyma.13G220200 Glycine max HOM05D000710 ORTHO05D000336 2.5e-08 62.4 90 42.2
PSO541G4900 Papaver somniferum HOM05D000710 ORTHO05D000336 2.5e-08 62.4 85 42.4
Eucgr.E02466 Eucalyptus grandis HOM05D000710 ORTHO05D000336 3.2e-08 62.0 84 41.7
Eucgr.E02469 Eucalyptus grandis HOM05D000710 ORTHO05D000336 3.2e-08 62.0 84 41.7
Eucgr.E02470 Eucalyptus grandis HOM05D000710 ORTHO05D000336 3.2e-08 62.0 84 41.7
PSO675G8022 Papaver somniferum HOM05D000710 ORTHO05D000336 3.2e-08 62.0 84 42.9
AL9U10540 Arabidopsis lyrata HOM05D000710 ORTHO05D000336 4.2e-08 61.6 79 40.5
CARHR252060 Cardamine hirsuta HOM05D000710 ORTHO05D000336 4.2e-08 61.6 78 38.5
Cfa000866 Carpinus fangiana HOM05D000710 ORTHO05D000336 4.2e-08 61.6 84 38.1
Prupe.4G087900 Prunus persica HOM05D000710 ORTHO05D000336 4.2e-08 61.6 91 37.4
Zm00001eb413420 Zea mays HOM05D000710 ORTHO05D000336 4.2e-08 61.6 96 38.5
Haze_05720 Corylus avellana HOM05D000710 ORTHO05D000336 9.3e-08 60.5 84 38.1
Glyma.15G092200 Glycine max HOM05D000710 ORTHO05D000336 9.3e-08 60.5 81 43.2
Haze_05736 Corylus avellana HOM05D000710 ORTHO05D000336 1.2e-07 60.1 88 36.4
Sc05g0005910 Simmondsia chinensis HOM05D000710 ORTHO05D000336 1.2e-07 60.1 81 34.6
Eucgr.E02464 Eucalyptus grandis HOM05D000710 ORTHO05D000336 1.6e-07 59.7 87 40.2
Lalb_Chr12g0204161 Lupinus albus HOM05D000710 ORTHO05D000336 1.6e-07 59.7 82 41.5
Nn6g31932 Nelumbo nucifera HOM05D000710 ORTHO05D000336 1.6e-07 59.7 90 36.7
BraA09t35900Z Brassica rapa HOM05D000710 ORTHO05D000336 2.1e-07 59.3 80 38.8
MD05G1276900 Malus domestica HOM05D000710 ORTHO05D000336 2.7e-07 58.9 82 34.1
Phvul.006G166900 Phaseolus vulgaris HOM05D000710 ORTHO05D000336 2.7e-07 58.9 80 41.2
AT4G05490 Arabidopsis thaliana HOM05D000710 ORTHO05D000336 3.5e-07 58.5 52 50.0
BcaC04g23955 Brassica carinata HOM05D000710 ORTHO05D000336 3.5e-07 58.5 80 37.5
Haze_05723 Corylus avellana HOM05D000710 ORTHO05D000336 3.5e-07 58.5 89 38.2
Haze_05728 Corylus avellana HOM05D000710 ORTHO05D000336 3.5e-07 58.5 89 38.2
MD05G1060300 Malus domestica HOM05D000710 ORTHO05D000336 3.5e-07 58.5 86 36.0
MD05G1277000 Malus domestica HOM05D000710 ORTHO05D000336 3.5e-07 58.5 86 36.0
Os08g0196200 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 3.5e-07 58.5 82 40.2
Aqoxy2G00948 Aquilegia oxysepala HOM05D000710 ORTHO05D000336 4.6e-07 58.2 88 37.5
CiPaw.10G087100 Carya illinoinensis HOM05D000710 ORTHO05D000336 4.6e-07 58.2 89 36.0
Os08g0194350 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 4.6e-07 58.2 96 40.6
GSVIVG01021579001 Vitis vinifera HOM05D000710 ORTHO05D000336 4.6e-07 58.2 92 35.9
A09p02890 Brassica napus HOM05D000710 ORTHO05D000336 7.9e-07 57.4 80 36.2
Cfa000869 Carpinus fangiana HOM05D000710 ORTHO05D000336 7.9e-07 57.4 83 36.1
Thhalv10028911m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 7.9e-07 57.4 80 35.0
PSO017G5374 Papaver somniferum HOM05D000710 ORTHO05D000336 7.9e-07 57.4 100 35.0
BraA09t35934Z Brassica rapa HOM05D000710 ORTHO05D000336 1.0e-06 57.0 86 38.4
Haze_05726 Corylus avellana HOM05D000710 ORTHO05D000336 1.0e-06 57.0 84 36.9
Prupe.4G087700 Prunus persica HOM05D000710 ORTHO05D000336 1.0e-06 57.0 91 37.4
A09p02930 Brassica napus HOM05D000710 ORTHO05D000336 1.3e-06 56.6 86 38.4
FAN21G3558 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.3e-06 56.6 101 31.7
Hma1.2p1_0119F.1_g056780 Hydrangea macrophylla HOM05D000710 ORTHO05D000336 1.3e-06 56.6 84 36.9
MBI02_g19810_MAGBIO Magnolia biondii HOM05D000710 ORTHO05D000336 1.3e-06 56.6 83 38.6
Manes.14G135100 Manihot esculenta HOM05D000710 ORTHO05D000336 1.3e-06 56.6 81 38.3
CARHR252100 Cardamine hirsuta HOM05D000710 ORTHO05D000336 1.8e-06 56.2 77 37.7
Cc09_g05800 Coffea canephora HOM05D000710 ORTHO05D000336 1.8e-06 56.2 78 39.7
Nitab4.5_0005963g0030 Nicotiana tabacum HOM05D000710 ORTHO05D000336 1.8e-06 56.2 75 38.7
RcHm_v2.0_Chr6g0310971 Rosa chinensis HOM05D000710 ORTHO05D000336 1.8e-06 56.2 89 32.6
DCAR_007854 Daucus carota HOM05D000710 ORTHO05D000336 2.3e-06 55.8 79 35.4
FvH4_3g09552 Fragaria vesca HOM05D000710 ORTHO05D000336 2.3e-06 55.8 82 39.0
FAN11G2146 Fragaria x ananassa HOM05D000710 ORTHO05D000336 3.0e-06 55.5 102 30.4
Sopen08g004650 Solanum pennellii HOM05D000710 ORTHO05D000336 3.0e-06 55.5 74 37.8
BcaC04g23956 Brassica carinata HOM05D000710 ORTHO05D000336 3.9e-06 55.1 57 42.1
ClCG01G025000 Citrullus lanatus HOM05D000710 ORTHO05D000336 3.9e-06 55.1 80 36.2
FvH4_3g09530 Fragaria vesca HOM05D000710 ORTHO05D000336 3.9e-06 55.1 84 38.1
RcHm_v2.0_Chr5g0015251 Rosa chinensis HOM05D000710 ORTHO05D000336 3.9e-06 55.1 79 35.4
Thecc.02G010600 Theobroma cacao HOM05D000710 ORTHO05D000336 3.9e-06 55.1 82 37.8
Lj2A324T63 Lonicera japonica HOM05D000710 ORTHO05D000336 5.1e-06 54.7 82 39.0
Nitab4.5_0003368g0040 Nicotiana tabacum HOM05D000710 ORTHO05D000336 5.1e-06 54.7 76 39.5
Solyc08g013800.4 Solanum lycopersicum HOM05D000710 ORTHO05D000336 5.1e-06 54.7 80 36.2
Aa31LG9G8900 Aethionema arabicum HOM05D000710 ORTHO05D000336 6.7e-06 54.3 75 37.3
arahy.Tifrunner.gnm1.ann1.3E8YP2 Arachis hypogaea HOM05D000710 ORTHO05D000336 6.7e-06 54.3 79 31.6
CANSAT11G2672 Cannabis sativa HOM05D000710 ORTHO05D000336 6.7e-06 54.3 91 35.2
Cfa000872 Carpinus fangiana HOM05D000710 ORTHO05D000336 6.7e-06 54.3 79 34.2
CiPaw.10G087000 Carya illinoinensis HOM05D000710 ORTHO05D000336 6.7e-06 54.3 88 35.2
COL.COLO4_34054 Corchorus olitorius HOM05D000710 ORTHO05D000336 6.7e-06 54.3 86 37.2
PSO017G4394 Papaver somniferum HOM05D000710 ORTHO05D000336 6.7e-06 54.3 85 38.8
RcHm_v2.0_Chr6g0277551 Rosa chinensis HOM05D000710 ORTHO05D000336 6.7e-06 54.3 79 34.2
Actinidia39596 Actinidia chinensis HOM05D000710 ORTHO05D000336 8.7e-06 53.9 81 37.0
CANSAT11G2519 Cannabis sativa HOM05D000710 ORTHO05D000336 8.7e-06 53.9 78 34.6
Cfa000865 Carpinus fangiana HOM05D000710 ORTHO05D000336 8.7e-06 53.9 88 34.1
Cfa012879 Carpinus fangiana HOM05D000710 ORTHO05D000336 8.7e-06 53.9 83 32.5
CiPaw.09G117600 Carya illinoinensis HOM05D000710 ORTHO05D000336 8.7e-06 53.9 87 33.3
CDE02G0027 Ceratophyllum demersum HOM05D000710 ORTHO05D000336 8.7e-06 53.9 85 37.6
Haze_05719 Corylus avellana HOM05D000710 ORTHO05D000336 8.7e-06 53.9 86 34.9
MELO3C007094.2 Cucumis melo HOM05D000710 ORTHO05D000336 8.7e-06 53.9 52 44.2
CsaV3_6G052170 Cucumis sativus L. HOM05D000710 ORTHO05D000336 8.7e-06 53.9 52 44.2
Lsat_1_v5_gn_1_7600 Lactuca sativa HOM05D000710 ORTHO05D000336 8.7e-06 53.9 83 33.7
Oeu031324.1 Olea europaea HOM05D000710 ORTHO05D000336 8.7e-06 53.9 77 40.3
PSO541G2007 Papaver somniferum HOM05D000710 ORTHO05D000336 8.7e-06 53.9 81 39.5
PSO541G5650 Papaver somniferum HOM05D000710 ORTHO05D000336 8.7e-06 53.9 91 35.2
PSO675G3801 Papaver somniferum HOM05D000710 ORTHO05D000336 8.7e-06 53.9 56 50.0


User provided reference genes

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