Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb385630 Zea mays HOM05D002549 ORTHO05D002755 1.9e-66 255.8 136 100.0
Zm00001eb276830 Zea mays HOM05D002549 ORTHO05D002755 1.8e-27 126.3 126 64.3
Os06g0601100 Oryza sativa ssp. japonica HOM05D002549 ORTHO05D002755 9.0e-24 114.0 152 51.3
Zm00001eb235490 Zea mays HOM05D002549 ORTHO05D002755 2.1e-20 102.8 145 50.3
Os01g0174100 Oryza sativa ssp. japonica HOM05D002549 ORTHO05D002755 1.8e-16 89.7 117 47.0
Zm00001eb122730 Zea mays HOM05D002549 ORTHO05D002755 4.5e-15 85.1 137 43.1
Aqoxy7G02107 Aquilegia oxysepala HOM05D002549 ORTHO05D002755 4.2e-13 78.6 132 42.4
Duzib168G1278 Durio zibethinus HOM05D002549 ORTHO05D002755 3.6e-12 75.5 129 40.3
TAR625G1243 Trochodendron aralioides HOM05D002549 ORTHO05D002755 3.6e-12 75.5 136 42.6
CsaV3_7G032570 Cucumis sativus L. HOM05D002549 ORTHO05D002755 6.1e-12 74.7 134 40.3
CSS0010325 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 7.9e-12 74.3 138 37.0
CSS0036416 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 7.9e-12 74.3 138 37.0
Cfa003350 Carpinus fangiana HOM05D002549 ORTHO05D002755 1.0e-11 73.9 121 43.0
Actinidia08809 Actinidia chinensis HOM05D002549 ORTHO05D002755 1.4e-11 73.6 128 39.8
Gohir.D05G018300 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.4e-11 73.6 128 41.4
PSO170G1992 Papaver somniferum HOM05D002549 ORTHO05D002755 1.4e-11 73.6 128 40.6
Dinv30577 Davidia involucrata HOM05D002549 ORTHO05D002755 1.8e-11 73.2 118 40.7
PSO455G0279 Papaver somniferum HOM05D002549 ORTHO05D002755 1.8e-11 73.2 130 40.8
CAN.G407.104 Capsicum annuum HOM05D002549 ORTHO05D002755 2.3e-11 72.8 141 39.7
CiPaw.01G245100 Carya illinoinensis HOM05D002549 ORTHO05D002755 2.3e-11 72.8 142 37.3
Rhsim12G0192900 Rhododendron simsii HOM05D002549 ORTHO05D002755 2.3e-11 72.8 150 38.0
TAR383G0202 Trochodendron aralioides HOM05D002549 ORTHO05D002755 2.3e-11 72.8 116 39.7
Nn8g39394 Nelumbo nucifera HOM05D002549 ORTHO05D002755 3.0e-11 72.4 133 42.9
TAR626G1731 Trochodendron aralioides HOM05D002549 ORTHO05D002755 3.0e-11 72.4 114 36.8
Gohir.A05G017400 Gossypium hirsutum HOM05D002549 ORTHO05D002755 3.9e-11 72.0 128 41.4
Gorai.009G018700 Gossypium raimondii HOM05D002549 ORTHO05D002755 3.9e-11 72.0 128 41.4
Manes.11G053601 Manihot esculenta HOM05D002549 ORTHO05D002755 6.7e-11 71.2 115 40.0
Glyma.17G116100 Glycine max HOM05D002549 ORTHO05D002755 8.8e-11 70.9 130 34.6
MBI01_g37816_MAGBIO Magnolia biondii HOM05D002549 ORTHO05D002755 8.8e-11 70.9 119 41.2
Nn2g11971 Nelumbo nucifera HOM05D002549 ORTHO05D002755 8.8e-11 70.9 116 40.5
SGA_v2.0_scaffold5G02666 Striga asiatica HOM05D002549 ORTHO05D002755 1.1e-10 70.5 133 39.8
MSTRG.11120 Avicennia marina HOM05D002549 ORTHO05D002755 1.5e-10 70.1 129 37.2
MELO3C023405.2 Cucumis melo HOM05D002549 ORTHO05D002755 1.5e-10 70.1 133 38.3
Solyc03g116490.1 Solanum lycopersicum HOM05D002549 ORTHO05D002755 1.5e-10 70.1 152 34.2
Phvul.010G154100 Phaseolus vulgaris HOM05D002549 ORTHO05D002755 2.0e-10 69.7 132 35.6
ClCG07G012770 Citrullus lanatus HOM05D002549 ORTHO05D002755 3.3e-10 68.9 131 34.4
COL.COLO4_05774 Corchorus olitorius HOM05D002549 ORTHO05D002755 3.3e-10 68.9 129 35.7
MD02G1035000 Malus domestica HOM05D002549 ORTHO05D002755 3.3e-10 68.9 132 37.1
HPP92_021545 Vanilla planifolia HOM05D002549 ORTHO05D002755 4.4e-10 68.6 137 43.1
Haze_25611 Corylus avellana HOM05D002549 ORTHO05D002755 5.7e-10 68.2 114 43.0
HPP92_021485 Vanilla planifolia HOM05D002549 ORTHO05D002755 5.7e-10 68.2 136 41.9
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 7.4e-10 67.8 123 35.8
CANSAT56G3753 Cannabis sativa HOM05D002549 ORTHO05D002755 9.7e-10 67.4 116 39.7
Duzib187G0701 Durio zibethinus HOM05D002549 ORTHO05D002755 9.7e-10 67.4 128 33.6
Gohir.D10G075600 Gossypium hirsutum HOM05D002549 ORTHO05D002755 9.7e-10 67.4 131 32.8
Oeu063796.1 Olea europaea HOM05D002549 ORTHO05D002755 9.7e-10 67.4 130 36.2
Zm00001eb294500 Zea mays HOM05D002549 ORTHO05D002755 9.7e-10 67.4 129 38.8
Sopen03g035380 Solanum pennellii HOM05D002549 ORTHO05D002755 1.3e-09 67.0 135 35.6
ClCG09G002760 Citrullus lanatus HOM05D002549 ORTHO05D002755 2.2e-09 66.2 134 37.3
Duzib160G0907 Durio zibethinus HOM05D002549 ORTHO05D002755 2.2e-09 66.2 149 34.9
Gorai.011G081600 Gossypium raimondii HOM05D002549 ORTHO05D002755 2.2e-09 66.2 131 33.6
Oeu033467.1 Olea europaea HOM05D002549 ORTHO05D002755 2.2e-09 66.2 113 38.1
Sed0003846 Sechium edule HOM05D002549 ORTHO05D002755 2.2e-09 66.2 119 39.5
Ciclev10010562m.g Citrus clementina HOM05D002549 ORTHO05D002755 2.8e-09 65.9 115 39.1
Gohir.A10G075800 Gossypium hirsutum HOM05D002549 ORTHO05D002755 2.8e-09 65.9 131 32.8
Ah.14g080260 Amaranthus hybridus HOM05D002549 ORTHO05D002755 3.7e-09 65.5 136 34.6
MSTRG.22728 Avicennia marina HOM05D002549 ORTHO05D002755 3.7e-09 65.5 132 36.4
Dinv38101 Davidia involucrata HOM05D002549 ORTHO05D002755 3.7e-09 65.5 148 35.1
Hma1.2p1_0665F.1_g199110 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 3.7e-09 65.5 129 34.9
Os05g0542732 Oryza sativa ssp. japonica HOM05D002549 ORTHO05D002755 3.7e-09 65.5 142 38.0
HPP92_021533 Vanilla planifolia HOM05D002549 ORTHO05D002755 3.7e-09 65.5 136 42.6
Actinidia07432 Actinidia chinensis HOM05D002549 ORTHO05D002755 4.8e-09 65.1 132 36.4
AUR62011092 Chenopodium quinoa HOM05D002549 ORTHO05D002755 4.8e-09 65.1 142 33.8
Eucgr.C01136 Eucalyptus grandis HOM05D002549 ORTHO05D002755 4.8e-09 65.1 134 35.1
Nitab4.5_0002257g0060 Nicotiana tabacum HOM05D002549 ORTHO05D002755 4.8e-09 65.1 132 34.8
Sed0026525 Sechium edule HOM05D002549 ORTHO05D002755 4.8e-09 65.1 131 34.4
Actinidia26401 Actinidia chinensis HOM05D002549 ORTHO05D002755 6.3e-09 64.7 131 37.4
EL10Ac8g18620 Beta vulgaris HOM05D002549 ORTHO05D002755 6.3e-09 64.7 130 34.6
CiPaw.02G155200 Carya illinoinensis HOM05D002549 ORTHO05D002755 6.3e-09 64.7 129 37.2
DCAR_017826 Daucus carota HOM05D002549 ORTHO05D002755 6.3e-09 64.7 135 37.0
Duzib235G0326 Durio zibethinus HOM05D002549 ORTHO05D002755 6.3e-09 64.7 137 35.8
Lalb_Chr25g0279471 Lupinus albus HOM05D002549 ORTHO05D002755 6.3e-09 64.7 132 33.3
arahy.Tifrunner.gnm1.ann1.62RLPM Arachis hypogaea HOM05D002549 ORTHO05D002755 8.2e-09 64.3 136 35.3
Glyma.07G031900 Glycine max HOM05D002549 ORTHO05D002755 8.2e-09 64.3 133 38.3
Oeu015240.1 Olea europaea HOM05D002549 ORTHO05D002755 8.2e-09 64.3 113 35.4
Phvul.005G175700 Phaseolus vulgaris HOM05D002549 ORTHO05D002755 8.2e-09 64.3 138 32.6
QL05p027977 Quercus lobata HOM05D002549 ORTHO05D002755 8.2e-09 64.3 136 34.6
Sed0016403 Sechium edule HOM05D002549 ORTHO05D002755 8.2e-09 64.3 132 34.8
CSS0001526 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.1e-08 63.9 134 35.1
CSS0031007 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.1e-08 63.9 134 35.1
Haze_16521 Corylus avellana HOM05D002549 ORTHO05D002755 1.1e-08 63.9 128 39.1
Hma1.2p1_0515F.1_g170200 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 1.1e-08 63.9 144 34.7
Lj3g0000921 Lotus japonicus HOM05D002549 ORTHO05D002755 1.1e-08 63.9 138 35.5
AUR62033481 Chenopodium quinoa HOM05D002549 ORTHO05D002755 1.4e-08 63.5 116 38.8
Migut.I00796 Erythranthe guttata HOM05D002549 ORTHO05D002755 1.4e-08 63.5 123 38.2
Gorai.001G041000 Gossypium raimondii HOM05D002549 ORTHO05D002755 1.4e-08 63.5 134 35.8
Prupe.7G240000 Prunus persica HOM05D002549 ORTHO05D002755 1.4e-08 63.5 132 37.1
PGSC0003DMG400000607 Solanum tuberosum HOM05D002549 ORTHO05D002755 1.4e-08 63.5 133 34.6
Dinv41529 Davidia involucrata HOM05D002549 ORTHO05D002755 1.8e-08 63.2 113 36.3
BcaB05g25290 Brassica carinata HOM05D002549 ORTHO05D002755 2.4e-08 62.8 140 33.6
Ca_01073_v3 Cicer arietinum L. HOM05D002549 ORTHO05D002755 2.4e-08 62.8 136 35.3
Gohir.D07G038900 Gossypium hirsutum HOM05D002549 ORTHO05D002755 2.4e-08 62.8 133 36.1
Sc18g0000680 Simmondsia chinensis HOM05D002549 ORTHO05D002755 2.4e-08 62.8 113 37.2
Atru.chr7.2390 Acer truncatum HOM05D002549 ORTHO05D002755 3.1e-08 62.4 131 38.2
CSS0043623 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 3.1e-08 62.4 136 36.0
CiPaw.03G242300 Carya illinoinensis HOM05D002549 ORTHO05D002755 3.1e-08 62.4 137 34.3
Phvul.003G163200 Phaseolus vulgaris HOM05D002549 ORTHO05D002755 3.1e-08 62.4 120 36.7
Potri.003G062200 Populus trichocarpa HOM05D002549 ORTHO05D002755 3.1e-08 62.4 131 35.1
RcHm_v2.0_Chr2g0136461 Rosa chinensis HOM05D002549 ORTHO05D002755 3.1e-08 62.4 144 35.4
unitig_899.g14782 Utricularia gibba HOM05D002549 ORTHO05D002755 3.1e-08 62.4 135 34.1
CSS0021729 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 4.1e-08 62.0 136 36.0
Lalb_Chr13g0301951 Lupinus albus HOM05D002549 ORTHO05D002755 4.1e-08 62.0 114 36.0
Sed0002433 Sechium edule HOM05D002549 ORTHO05D002755 4.1e-08 62.0 133 35.3
BolC2t09762H Brassica oleracea HOM05D002549 ORTHO05D002755 5.3e-08 61.6 137 35.0
Cc06_g08750 Coffea canephora HOM05D002549 ORTHO05D002755 5.3e-08 61.6 135 34.8
MELO3C017897.2 Cucumis melo HOM05D002549 ORTHO05D002755 5.3e-08 61.6 135 34.8
Glyma.13G364000 Glycine max HOM05D002549 ORTHO05D002755 5.3e-08 61.6 132 34.8
Medtr2g103380 Medicago truncatula HOM05D002549 ORTHO05D002755 5.3e-08 61.6 150 32.7
Medtr4g011060 Medicago truncatula HOM05D002549 ORTHO05D002755 5.3e-08 61.6 137 37.2
Peaxi162Scf00274g00827 Petunia axillaris HOM05D002549 ORTHO05D002755 5.3e-08 61.6 128 32.0
Sed0017462 Sechium edule HOM05D002549 ORTHO05D002755 5.3e-08 61.6 141 36.2
Thecc.06G070600 Theobroma cacao HOM05D002549 ORTHO05D002755 5.3e-08 61.6 136 37.5
Glyma.13G168400 Glycine max HOM05D002549 ORTHO05D002755 7.0e-08 61.2 130 31.5
Glyma.15G009900 Glycine max HOM05D002549 ORTHO05D002755 7.0e-08 61.2 123 38.2
SGA_v2.0_scaffold37G14785 Striga asiatica HOM05D002549 ORTHO05D002755 7.0e-08 61.2 127 37.8
Gohir.A05G125500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 9.1e-08 60.8 152 34.9
Potri.001G172100 Populus trichocarpa HOM05D002549 ORTHO05D002755 9.1e-08 60.8 128 37.5
arahy.Tifrunner.gnm1.ann1.CZ6M1X Arachis hypogaea HOM05D002549 ORTHO05D002755 1.2e-07 60.5 135 34.1
Gohir.A07G034900 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.2e-07 60.5 128 34.4
PGR102G2540 Punica granatum HOM05D002549 ORTHO05D002755 1.2e-07 60.5 136 36.0
Sabra01G0139600 Salix brachista HOM05D002549 ORTHO05D002755 1.2e-07 60.5 126 34.9
Gorai.009G130500 Gossypium raimondii HOM05D002549 ORTHO05D002755 1.5e-07 60.1 135 34.8
Manes.04G115900 Manihot esculenta HOM05D002549 ORTHO05D002755 1.5e-07 60.1 134 36.6
Psat5g301360 Pisum sativum HOM05D002549 ORTHO05D002755 1.5e-07 60.1 113 36.3
Prupe.3G081500 Prunus persica HOM05D002549 ORTHO05D002755 1.5e-07 60.1 136 33.1
Atru.chr7.1209 Acer truncatum HOM05D002549 ORTHO05D002755 2.0e-07 59.7 130 35.4
BcaC03g15995 Brassica carinata HOM05D002549 ORTHO05D002755 2.0e-07 59.7 135 33.3
C02p37500 Brassica napus HOM05D002549 ORTHO05D002755 2.0e-07 59.7 135 33.3
BraA02t07367Z Brassica rapa HOM05D002549 ORTHO05D002755 2.0e-07 59.7 137 34.3
Oeu063538.1 Olea europaea HOM05D002549 ORTHO05D002755 2.0e-07 59.7 129 31.0
unitig_0.g363 Utricularia gibba HOM05D002549 ORTHO05D002755 2.0e-07 59.7 120 35.8
CsaV3_1G029830 Cucumis sativus L. HOM05D002549 ORTHO05D002755 2.6e-07 59.3 143 35.0
Thhalv10009053m.g Eutrema salsugineum HOM05D002549 ORTHO05D002755 2.6e-07 59.3 153 34.0
Cpa.g.sc10.229 Carica papaya HOM05D002549 ORTHO05D002755 3.4e-07 58.9 148 35.1
Glyma.08G210800 Glycine max HOM05D002549 ORTHO05D002755 3.4e-07 58.9 131 33.6
Gohir.D05G126500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 3.4e-07 58.9 135 34.1
VMungo1080G1223 Vigna mungo HOM05D002549 ORTHO05D002755 3.4e-07 58.9 136 33.8
VMungo1215G2005 Vigna mungo HOM05D002549 ORTHO05D002755 3.4e-07 58.9 134 32.8
COL.COLO4_12915 Corchorus olitorius HOM05D002549 ORTHO05D002755 4.5e-07 58.5 144 33.3
Sp5g35620 Schrenkiella parvula HOM05D002549 ORTHO05D002755 4.5e-07 58.5 144 34.7
Lsat_1_v5_gn_5_97080 Lactuca sativa HOM05D002549 ORTHO05D002755 5.9e-07 58.2 132 32.6
TPR.G8449 Trifolium pratense HOM05D002549 ORTHO05D002755 5.9e-07 58.2 136 33.1
VMungo0331G1840 Vigna mungo HOM05D002549 ORTHO05D002755 5.9e-07 58.2 132 32.6
A02p23750 Brassica napus HOM05D002549 ORTHO05D002755 7.7e-07 57.8 135 31.1
CANSAT11G2695 Cannabis sativa HOM05D002549 ORTHO05D002755 7.7e-07 57.8 127 35.4
CARHR074300 Cardamine hirsuta HOM05D002549 ORTHO05D002755 7.7e-07 57.8 134 30.6
Lsat_1_v5_gn_5_132361 Lactuca sativa HOM05D002549 ORTHO05D002755 7.7e-07 57.8 134 38.1
TPR.G38685 Trifolium pratense HOM05D002549 ORTHO05D002755 7.7e-07 57.8 126 34.1
Aa31LG7G160 Aethionema arabicum HOM05D002549 ORTHO05D002755 1.0e-06 57.4 149 32.9
Thhalv10019690m.g Eutrema salsugineum HOM05D002549 ORTHO05D002755 1.0e-06 57.4 134 32.8
Actinidia15996 Actinidia chinensis HOM05D002549 ORTHO05D002755 1.3e-06 57.0 114 34.2
AL2G41330 Arabidopsis lyrata HOM05D002549 ORTHO05D002755 1.3e-06 57.0 139 34.5
ClCG06G010950 Citrullus lanatus HOM05D002549 ORTHO05D002755 1.3e-06 57.0 136 33.8
CsaV3_4G001430 Cucumis sativus L. HOM05D002549 ORTHO05D002755 1.3e-06 57.0 135 34.1
Oeu052277.1 Olea europaea HOM05D002549 ORTHO05D002755 1.3e-06 57.0 114 34.2
THA.LOC104812501 Tarenaya hassleriana HOM05D002549 ORTHO05D002755 1.3e-06 57.0 144 31.9
AT1G80180 Arabidopsis thaliana HOM05D002549 ORTHO05D002755 1.7e-06 56.6 141 35.5
MELO3C026647.2 Cucumis melo HOM05D002549 ORTHO05D002755 1.7e-06 56.6 135 33.3
Aa31sc453G10 Aethionema arabicum HOM05D002549 ORTHO05D002755 2.9e-06 55.8 112 35.7
BcaC05g25481 Brassica carinata HOM05D002549 ORTHO05D002755 2.9e-06 55.8 139 29.5
CARHR015940 Cardamine hirsuta HOM05D002549 ORTHO05D002755 2.9e-06 55.8 145 31.7
Migut.D01057 Erythranthe guttata HOM05D002549 ORTHO05D002755 2.9e-06 55.8 132 34.1
Aqoxy7G03731 Aquilegia oxysepala HOM05D002549 ORTHO05D002755 3.8e-06 55.5 114 35.1
FAN26G2275 Fragaria x ananassa HOM05D002549 ORTHO05D002755 3.8e-06 55.5 136 36.8
Sp1g13750 Schrenkiella parvula HOM05D002549 ORTHO05D002755 3.8e-06 55.5 123 35.0
Thecc.09G123500 Theobroma cacao HOM05D002549 ORTHO05D002755 3.8e-06 55.5 129 32.6
Zm00001eb155470 Zea mays HOM05D002549 ORTHO05D002755 3.8e-06 55.5 129 34.1
AT1G15400 Arabidopsis thaliana HOM05D002549 ORTHO05D002755 5.0e-06 55.1 147 32.7
Hma1.2p1_0018F.1_g012630 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 5.0e-06 55.1 112 34.8
Psat4g040920 Pisum sativum HOM05D002549 ORTHO05D002755 5.0e-06 55.1 115 33.0
Aa31LG4G480 Aethionema arabicum HOM05D002549 ORTHO05D002755 6.5e-06 54.7 137 34.3
A06p11440 Brassica napus HOM05D002549 ORTHO05D002755 6.5e-06 54.7 117 34.2
BraA06t24322Z Brassica rapa HOM05D002549 ORTHO05D002755 6.5e-06 54.7 117 34.2
PGR031G0796 Punica granatum HOM05D002549 ORTHO05D002755 6.5e-06 54.7 133 35.3
AL1G27510 Arabidopsis lyrata HOM05D002549 ORTHO05D002755 8.5e-06 54.3 149 33.6
BolC5t30093H Brassica oleracea HOM05D002549 ORTHO05D002755 8.5e-06 54.3 138 32.6
Carub.0002s2734 Capsella rubella HOM05D002549 ORTHO05D002755 8.5e-06 54.3 148 33.1
PGR142G0090 Punica granatum HOM05D002549 ORTHO05D002755 8.5e-06 54.3 141 31.9
RcHm_v2.0_Chr2g0089091 Rosa chinensis HOM05D002549 ORTHO05D002755 8.5e-06 54.3 132 37.1
Solyc06g068020.1 Solanum lycopersicum HOM05D002549 ORTHO05D002755 8.5e-06 54.3 137 30.7
HPP92_023166 Vanilla planifolia HOM05D002549 ORTHO05D002755 8.5e-06 54.3 128 35.2


User provided reference genes

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