Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 6.0e-64 247.3 119 100.0
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 6.0e-64 247.3 119 100.0
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 6.0e-64 247.3 119 100.0
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 6.0e-64 247.3 119 100.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 6.0e-64 247.3 119 100.0
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 8.6e-63 243.4 118 100.0
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.6e-61 239.2 119 96.6
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 3.6e-61 238.0 119 95.8
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 4.7e-61 237.7 119 97.5
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 6.2e-61 237.3 119 95.0
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 6.2e-61 237.3 119 95.0
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 8.1e-61 236.9 119 96.6
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 8.1e-61 236.9 119 96.6
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 8.1e-61 236.9 119 96.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 8.1e-61 236.9 119 96.6
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-60 236.1 119 95.8
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-60 236.1 119 95.8
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-60 236.1 119 95.8
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-60 236.1 119 95.8
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.8e-60 235.7 119 95.8
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 3.1e-60 235.0 119 95.0
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.1e-60 235.0 119 95.8
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 3.1e-60 235.0 119 95.8
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 3.1e-60 235.0 119 95.8
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 5.2e-60 234.2 119 96.6
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 5.2e-60 234.2 119 96.6
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.2e-59 233.0 119 95.0
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.2e-59 233.0 119 95.0
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.2e-59 233.0 119 95.0
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.5e-59 232.6 119 95.0
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.5e-59 232.6 119 95.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.5e-59 232.6 119 95.0
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.5e-59 232.6 119 95.0
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 2.6e-59 231.9 119 94.1
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 2.6e-59 231.9 119 93.3
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 3.4e-59 231.5 119 93.3
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 4.4e-59 231.1 119 92.4
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 5.8e-59 230.7 119 93.3
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 7.6e-59 230.3 119 95.0
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 7.6e-59 230.3 119 95.0
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 9.9e-59 229.9 119 94.1
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 4.9e-58 227.6 119 93.3
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 4.9e-58 227.6 115 95.7
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 4.9e-58 227.6 119 93.3
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 4.9e-58 227.6 119 94.1
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 8.4e-58 226.9 114 95.6
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-57 225.3 119 91.6
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 5.6e-54 214.2 107 96.3
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.8e-52 209.1 108 94.4
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.9e-52 207.2 107 92.5
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 6.9e-52 207.2 111 90.1
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 9.0e-52 206.8 107 92.5
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 9.0e-52 206.8 107 92.5
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-51 206.5 119 85.7
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.4e-51 204.5 107 91.6
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.4e-49 199.5 103 94.2
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 5.4e-49 197.6 119 79.8
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.2e-48 196.4 116 83.6
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 2.1e-48 195.7 119 84.0
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.9e-46 189.1 94 94.7
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.9e-46 189.1 94 95.7
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 4.3e-46 188.0 101 88.1
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 6.2e-45 184.1 94 93.6
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.0e-36 153.7 119 70.6
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 2.7e-32 142.1 78 89.7
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 1.3e-31 139.8 98 73.5
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.7e-31 137.5 78 83.3
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 6.2e-29 131.0 63 95.2
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-28 128.6 75 82.7
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.0e-26 123.6 63 93.7
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.7e-26 122.9 63 93.7
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 5.5e-25 117.9 102 64.7
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.7e-23 110.9 69 78.3
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 8.5e-18 94.0 48 87.5
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.6e-16 89.7 111 43.2
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.4e-15 86.7 63 68.3
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-13 80.1 41 85.4
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 2.2e-13 79.3 43 81.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 3.7e-13 78.6 115 31.3
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-11 73.6 43 74.4
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 2.0e-11 72.8 35 91.4
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-10 68.9 33 93.9
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-10 67.8 43 72.1
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 8.5e-10 67.4 38 86.8
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 5.5e-09 64.7 33 84.8
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 1.2e-08 63.5 29 96.6
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-08 63.2 31 83.9
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 7.9e-08 60.8 109 40.4
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.0e-07 60.5 70 42.9


User provided reference genes

Program Settings