Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 3.7e-154 548.1 266 100.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 3.7e-154 548.1 266 100.0
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 95.5
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.3e-146 523.1 266 96.2
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 2.2e-146 522.3 266 95.1
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.1e-145 520.0 266 94.7
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.1e-145 520.0 266 94.7
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.4e-145 518.8 266 95.9
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 94.7
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.2e-144 516.5 263 95.4
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 2.6e-144 515.4 266 94.7
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.9e-144 514.2 266 94.7
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 3.8e-143 511.5 266 94.7
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 3.8e-143 511.5 266 94.7
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.9e-142 509.2 266 93.2
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 3.2e-142 508.4 264 94.3
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 3.2e-142 508.4 266 94.4
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 3.2e-142 508.4 266 93.2
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 3.2e-142 508.4 266 93.6
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.6e-141 506.1 264 93.9
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 2.7e-141 505.4 266 94.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.0e-140 503.4 266 92.9
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.0e-140 503.4 266 92.9
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.8e-137 492.7 263 91.6
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.4e-137 492.3 266 91.7
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.2e-136 490.0 266 91.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.7e-135 486.1 252 95.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.2e-135 485.7 252 94.8
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 5.0e-135 484.6 253 94.1
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 6.5e-135 484.2 252 94.4
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 3.2e-134 481.9 252 94.0
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 5.2e-132 474.6 252 93.3
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 5.7e-131 471.1 266 88.0
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.7e-130 469.5 265 87.5
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.1e-129 466.8 265 89.1
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.2e-128 463.4 243 93.8
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.2e-128 463.4 243 93.8
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 3.5e-128 461.8 263 84.8
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 6.5e-127 457.6 240 92.9
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-126 456.4 239 94.1
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.9e-126 456.1 240 92.5
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 2.3e-124 449.1 264 85.6
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.4e-121 439.9 262 82.8
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 8.5e-119 430.6 211 100.0
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 8.5e-119 430.6 211 100.0
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.0e-116 422.2 261 81.2
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 2.0e-115 419.5 253 84.2
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.7e-114 416.4 209 95.2
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.2e-109 400.2 213 93.9
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.8e-108 394.0 209 92.8
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-104 383.6 252 78.6
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.3e-102 375.2 202 92.6
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-101 373.2 257 75.9
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 8.9e-100 367.5 209 89.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.1e-97 358.6 209 85.2
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 4.6e-96 355.1 187 94.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.3e-86 322.4 184 87.0
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 3.0e-79 299.3 161 91.9
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 2.5e-78 296.2 156 92.9
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.7e-74 283.5 254 63.4
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.6e-72 276.9 159 87.4
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 2.7e-72 276.2 148 91.9
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.7e-71 273.5 145 92.4
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 5.1e-71 271.9 148 89.9
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.5e-70 270.4 150 90.7
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.9e-70 270.0 145 91.0
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 3.1e-68 262.7 213 64.8
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-65 253.1 196 70.4
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 4.6e-64 248.8 279 47.7
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.0e-63 247.7 119 100.0
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.7e-63 246.9 122 98.4
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.3e-63 246.5 130 92.3
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.7e-56 223.0 160 74.4
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 6.0e-56 221.9 120 94.2
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 3.1e-52 209.5 108 94.4
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.4e-50 201.4 116 83.6
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.2e-49 199.5 103 94.2
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 2.7e-48 196.4 101 96.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.3e-47 194.1 115 87.8
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 2.5e-46 189.9 105 90.5
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 9.6e-46 188.0 101 88.1
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 2.5e-41 173.3 165 58.2
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 5.5e-41 172.2 85 94.1
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 2.3e-39 166.8 210 46.2
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-37 159.8 82 91.5
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-36 156.4 184 51.1
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 7.6e-35 151.8 84 88.1
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 5.0e-34 149.1 258 33.3
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 3.0e-31 139.8 98 73.5
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.1e-31 139.0 108 67.6
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 6.7e-31 138.7 82 86.6
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 5.7e-30 135.6 81 80.2
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-29 134.0 78 82.1
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.3e-29 132.1 149 52.3
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.3e-26 124.4 154 48.1
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 9.4e-25 118.2 102 64.7
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 9.4e-25 118.2 63 85.7
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.1e-24 117.1 75 78.7
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 9.7e-22 108.2 68 75.0
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 6.3e-21 105.5 56 89.3
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 5.3e-20 102.4 172 42.4
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.9e-19 99.0 64 76.6
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-17 94.0 48 87.5
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 7.2e-17 92.0 65 70.8
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 4.7e-16 89.4 119 44.5
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.0e-15 86.7 86 57.0
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-14 84.3 61 63.9
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.3e-14 83.2 65 60.0
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 7.4e-14 82.0 40 85.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 9.7e-14 81.6 84 51.2
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-13 80.1 41 85.4
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-12 76.6 51 80.4
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 5.3e-12 75.9 53 81.1
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.5e-11 72.8 56 71.4
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 3.8e-10 69.7 54 72.2
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 2.7e-08 63.5 29 96.6
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 2.7e-08 63.5 31 90.3
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.6e-08 63.2 31 83.9
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 2.3e-07 60.5 70 42.9
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.5e-06 57.8 32 78.1
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-06 57.8 30 76.7
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 3.3e-06 56.6 31 77.4


User provided reference genes

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