Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.7e-72 275.8 131 100.0
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 4.1e-66 254.6 129 93.0
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.0e-56 223.4 196 61.7
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 1.5e-47 193.0 99 93.9
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 9.3e-34 147.1 109 63.3
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.7e-32 142.9 109 60.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 1.7e-32 142.9 109 60.6
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 2.3e-32 142.5 109 59.6
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.9e-32 141.7 110 62.7
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 3.9e-32 141.7 109 59.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 8.7e-32 140.6 109 59.6
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 8.7e-32 140.6 109 59.6
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 1.1e-31 140.2 109 59.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 1.1e-31 140.2 109 59.6
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.5e-31 139.8 109 61.5
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.9e-31 139.4 109 59.6
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 1.9e-31 139.4 109 59.6
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 1.9e-31 139.4 109 58.7
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 5.6e-31 137.9 109 57.8
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 5.6e-31 137.9 109 60.6
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 7.4e-31 137.5 109 57.8
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 7.4e-31 137.5 109 57.8
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 9.6e-31 137.1 109 58.7
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 9.6e-31 137.1 110 61.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 9.6e-31 137.1 109 58.7
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.3e-30 136.7 109 56.9
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 1.3e-30 136.7 109 59.6
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 1.3e-30 136.7 109 56.0
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.3e-30 136.7 109 56.0
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.6e-30 136.3 109 57.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 1.6e-30 136.3 109 58.7
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.8e-30 135.6 109 56.9
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 2.8e-30 135.6 109 57.8
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 2.8e-30 135.6 109 58.7
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 4.8e-30 134.8 109 57.8
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 4.8e-30 134.8 109 57.8
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 6.2e-30 134.4 109 58.7
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 8.1e-30 134.0 109 58.7
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 8.1e-30 134.0 109 56.9
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 1.4e-29 133.3 109 56.9
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 2.4e-29 132.5 109 56.0
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.1e-29 132.1 107 57.9
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 4.0e-29 131.7 109 56.9
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 5.3e-29 131.3 109 56.0
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.3e-29 131.3 109 54.1
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 5.3e-29 131.3 108 56.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 9.0e-29 130.6 109 56.0
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 1.2e-28 130.2 109 57.8
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.2e-28 130.2 116 50.0
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.2e-28 130.2 109 56.9
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.2e-28 130.2 109 56.9
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.2e-28 130.2 109 56.0
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.2e-28 130.2 109 55.0
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 1.2e-28 130.2 108 55.6
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.6e-28 129.0 109 53.2
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.5e-28 128.3 112 56.2
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 4.5e-28 128.3 109 54.1
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 7.6e-28 127.5 108 55.6
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 9.9e-28 127.1 110 53.6
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 9.9e-28 127.1 109 55.0
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.7e-27 126.3 109 53.2
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.2e-27 125.9 109 56.9
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 4.9e-27 124.8 109 51.4
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 4.9e-27 124.8 109 51.4
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 4.9e-27 124.8 142 47.2
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 6.4e-27 124.4 109 51.4
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 8.4e-27 124.0 109 58.7
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 8.4e-27 124.0 109 52.3
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.4e-26 123.2 107 51.4
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.4e-26 123.2 108 50.0
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.4e-26 123.2 108 50.0
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.4e-26 123.2 111 58.6
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.4e-26 123.2 109 54.1
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.9e-26 122.9 109 51.4
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.9e-26 122.9 109 52.3
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 3.2e-26 122.1 109 49.5
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 5.5e-26 121.3 109 51.4
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 7.1e-26 120.9 104 54.8
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 9.3e-26 120.6 109 48.6
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 9.3e-26 120.6 109 49.5
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 9.3e-26 120.6 109 52.3
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 1.2e-25 120.2 108 49.1
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.2e-25 120.2 108 49.1
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.2e-25 120.2 109 51.4
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 2.7e-25 119.0 109 49.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 7.9e-25 117.5 109 48.6
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.0e-24 117.1 109 49.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 1.8e-24 116.3 110 49.1
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.8e-24 116.3 105 49.5
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 1.8e-24 116.3 109 52.3
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.8e-24 116.3 110 50.9
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 6.7e-24 114.4 109 47.7
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 8.7e-24 114.0 100 52.0
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.9e-23 112.8 111 55.9
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 3.3e-23 112.1 110 49.1
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.6e-22 109.8 110 48.2
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 3.7e-22 108.6 102 53.9
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 1.0e-19 100.5 110 47.3
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.5e-18 95.9 82 53.7
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 3.2e-18 95.5 111 45.0
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-17 93.6 93 47.3
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.6e-17 93.2 73 57.5
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.8e-16 89.7 108 39.8
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.5e-15 86.7 102 43.1
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.5e-15 85.9 82 50.0
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.8e-14 81.6 56 62.5
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-13 80.1 84 46.4
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 1.4e-13 80.1 116 37.1
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 9.0e-13 77.4 116 37.1
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.2e-12 77.0 118 31.4
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.6e-12 75.9 53 60.4
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-10 70.5 53 56.6
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.7e-09 65.9 55 49.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.6e-09 65.1 55 49.1
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.3e-08 63.5 117 32.5
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-06 57.0 62 43.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.6e-06 56.6 49 53.1
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.6e-06 56.6 49 53.1
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.8e-06 55.8 60 41.7
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 4.8e-06 55.1 115 34.8


User provided reference genes

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