Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb383750 Zea mays HOM05D003720 ORTHO05D019489 3.0e-102 375.2 187 100.0
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 4.9e-44 181.8 111 80.2
Zm00001eb024320 Zea mays HOM05D003720 ORTHO05D019489 9.5e-40 167.5 96 86.5
CDE07G1715 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 4.4e-21 105.5 107 51.4
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 4.4e-21 105.5 102 52.9
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 4.4e-21 105.5 157 40.1
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 5.8e-21 105.1 123 46.3
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 1.3e-20 104.0 123 45.5
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 2.2e-20 103.2 108 50.0
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 4.9e-20 102.1 123 44.7
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 4.9e-20 102.1 102 50.0
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 8.3e-20 101.3 107 50.5
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 8.3e-20 101.3 102 50.0
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 8.3e-20 101.3 124 42.7
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 1.1e-19 100.9 107 50.5
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 1.1e-19 100.9 127 44.1
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 1.4e-19 100.5 105 51.4
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 1.4e-19 100.5 123 43.9
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 1.9e-19 100.1 102 50.0
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.9e-19 100.1 151 40.4
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.9e-19 100.1 145 43.4
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 2.4e-19 99.8 105 50.5
Hma1.2p1_0245F.1_g101380 Hydrangea macrophylla HOM05D003720 ORTHO05D019489 2.4e-19 99.8 102 49.0
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 3.2e-19 99.4 130 43.8
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 3.2e-19 99.4 101 48.5
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 3.2e-19 99.4 128 42.2
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 4.1e-19 99.0 105 50.5
Cpa.g.sc23.151 Carica papaya HOM05D003720 ORTHO05D019489 4.1e-19 99.0 102 49.0
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 4.1e-19 99.0 101 50.5
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 4.1e-19 99.0 101 50.5
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 5.4e-19 98.6 108 47.2
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 5.4e-19 98.6 102 49.0
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 5.4e-19 98.6 101 50.5
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 5.4e-19 98.6 123 44.7
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 5.4e-19 98.6 147 42.9
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 7.1e-19 98.2 102 48.0
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 7.1e-19 98.2 144 43.8
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 9.2e-19 97.8 105 50.5
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 9.2e-19 97.8 125 44.0
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 9.2e-19 97.8 102 47.1
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 9.2e-19 97.8 101 49.5
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 9.2e-19 97.8 101 47.5
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 1.2e-18 97.4 105 49.5
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.2e-18 97.4 123 43.1
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 1.2e-18 97.4 102 47.1
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 1.6e-18 97.1 123 43.1
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 2.1e-18 96.7 102 49.0
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 2.1e-18 96.7 139 45.3
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 2.1e-18 96.7 198 37.9
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 2.7e-18 96.3 141 43.3
Gohir.A06G060266 Gossypium hirsutum HOM05D003720 ORTHO05D019489 2.7e-18 96.3 107 45.8
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.7e-18 96.3 107 45.8
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.7e-18 96.3 107 45.8
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 2.7e-18 96.3 101 49.5
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 3.5e-18 95.9 101 48.5
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 3.5e-18 95.9 137 44.5
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 4.6e-18 95.5 102 50.0
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 4.6e-18 95.5 101 47.5
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 4.6e-18 95.5 102 46.1
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 4.6e-18 95.5 143 42.7
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 4.6e-18 95.5 107 47.7
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 6.0e-18 95.1 107 45.8
BcaB02g10050 Brassica carinata HOM05D003720 ORTHO05D005312 6.0e-18 95.1 105 48.6
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 6.0e-18 95.1 105 48.6
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 6.0e-18 95.1 105 47.6
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 6.0e-18 95.1 105 48.6
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 6.0e-18 95.1 105 47.6
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 6.0e-18 95.1 125 43.2
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 6.0e-18 95.1 154 38.3
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 7.8e-18 94.7 107 44.9
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 7.8e-18 94.7 151 40.4
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 7.8e-18 94.7 128 43.0
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 1.0e-17 94.4 142 38.7
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.0e-17 94.4 138 39.1
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 1.0e-17 94.4 102 49.0
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 1.3e-17 94.0 159 38.4
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 1.7e-17 93.6 105 47.6
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 1.7e-17 93.6 160 38.8
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 1.7e-17 93.6 143 42.7
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 1.7e-17 93.6 139 43.9
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.7e-17 93.6 101 47.5
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 1.7e-17 93.6 102 49.0
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 2.3e-17 93.2 165 38.2
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 2.3e-17 93.2 102 47.1
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 2.3e-17 93.2 101 46.5
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 3.0e-17 92.8 170 38.8
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 3.9e-17 92.4 181 37.6
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 3.9e-17 92.4 160 40.0
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 5.1e-17 92.0 183 34.4
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 5.1e-17 92.0 141 40.4
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 5.1e-17 92.0 143 42.0
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 8.6e-17 91.3 139 40.3
Peaxi162Scf00256g00815 Petunia axillaris HOM05D003720 ORTHO05D005312 2.5e-16 89.7 140 39.3
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 3.3e-16 89.4 167 34.1
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 4.3e-16 89.0 152 39.5
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 5.6e-16 88.6 161 37.9
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 9.5e-16 87.8 114 45.6
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 2.8e-15 86.3 179 37.4
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 3.6e-15 85.9 130 36.2
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 4.7e-15 85.5 99 44.4
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 6.2e-15 85.1 109 42.2
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 8.1e-15 84.7 176 35.2
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.8e-14 83.6 99 43.4
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 6.8e-14 81.6 123 37.4
HPP92_014852 Vanilla planifolia HOM05D003720 ORTHO05D005312 1.9e-11 73.6 103 41.7
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 1.3e-09 67.4 69 47.8
Actinidia27747 Actinidia chinensis HOM05D003720 ORTHO05D019489 3.3e-08 62.8 104 37.5


User provided reference genes

Program Settings