Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 4205.2 2180 100.0
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2128.6 2050 57.0
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2123.6 2118 56.1
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2059.3 2183 53.0
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2044.2 1979 56.4
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2040.8 2159 53.9
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2017.7 2065 53.8
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2012.7 2160 53.5
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2000.3 2044 54.2
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 1999.2 2121 53.3
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1997.6 2047 53.9
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 1992.2 2218 51.1
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 1984.5 2186 51.2
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1983.4 2045 54.2
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1982.6 2218 51.4
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 1971.4 2227 50.8
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 1971.4 2204 51.0
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 1969.5 2049 53.3
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 1958.0 2199 50.5
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1954.1 1893 56.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 1947.9 2205 51.2
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 1946.4 1986 53.9
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1932.1 2077 52.3
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 1929.1 2172 50.8
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1928.7 1986 53.6
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 1924.4 2063 52.6
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1913.3 2162 50.9
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 1912.9 2225 49.3
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 1907.5 2200 50.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 1903.3 2104 51.4
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 1902.5 2058 52.3
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 1900.9 2049 52.7
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 1899.4 2158 50.8
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 1895.2 2120 50.8
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1894.8 2280 48.9
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1894.4 2078 52.3
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 1885.5 2182 49.7
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 1879.8 2039 52.6
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 1875.1 2055 52.3
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 1874.4 2053 52.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 1874.0 2182 50.1
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1869.7 2199 49.8
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1855.1 1631 60.6
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 1845.9 2136 49.5
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 1844.3 2045 51.0
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 1843.6 2061 50.9
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 1834.3 2096 50.2
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 1833.9 2063 50.3
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1833.9 2220 48.6
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 1828.1 2072 50.2
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 1827.4 2196 48.1
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 1825.4 2205 47.9
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 1825.4 2214 48.2
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1823.1 2204 47.9
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 1821.2 2216 48.1
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1816.2 2205 47.8
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 1812.0 2202 47.9
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 1796.9 2207 47.5
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1795.8 2190 48.4
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1791.2 2067 50.4
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1791.2 2067 50.4
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 1777.7 2530 45.0
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 1769.6 2096 49.0
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1766.1 2123 48.6
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 1763.0 1456 63.8
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1762.7 2171 47.9
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 1756.1 2347 45.8
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 1753.0 2255 46.8
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1724.1 2026 49.4
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 1722.2 1980 49.4
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1674.4 2124 47.3
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1633.6 1886 49.4
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1609.0 2232 44.6
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1580.8 1030 81.6
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1552.0 2261 43.5
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1544.3 1718 50.8
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1479.9 1994 43.7
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1442.2 2058 42.6
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1404.4 1118 65.7
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1393.3 3020 34.0
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1338.2 2027 40.9
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1327.0 1754 46.1
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1311.6 1752 46.0
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1305.0 2040 40.1
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1305.0 1351 52.3
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1211.1 1685 44.8
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1177.9 1995 37.9
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1174.1 1497 44.9
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1145.6 1560 44.2
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.6e-306 1056.6 913 60.9
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 1.4e-299 1034.2 934 59.1
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 3.1e-299 1033.1 828 63.4
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 6.1e-263 912.5 853 57.4
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 3.9e-217 760.4 1334 39.2
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.1e-184 652.5 683 53.4
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.3e-177 629.0 580 58.3
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 1.3e-177 629.0 721 49.7
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.1e-166 591.3 1057 37.7
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.6e-154 552.4 433 66.7
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.5e-152 545.0 459 62.1
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 1.2e-146 526.2 955 36.3
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.8e-143 514.2 853 37.6
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 2.3e-137 495.4 379 65.2
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 5.7e-136 490.7 434 60.8
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 3.7e-127 461.5 909 35.2
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.8e-126 459.1 379 60.9
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.3e-124 453.0 403 57.8
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 1.8e-121 442.6 772 37.4
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.0e-109 402.5 762 35.0
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 9.8e-104 383.6 296 66.9
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.0e-92 347.1 803 31.5
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 1.4e-89 336.7 1543 25.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 4.0e-89 335.1 289 60.6
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.3e-83 315.5 265 63.8
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 2.1e-82 312.8 362 52.2
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.5e-80 306.6 801 30.0
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.7e-79 303.1 1771 24.0
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 5.4e-70 271.6 315 51.1
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 7.3e-67 261.2 282 52.1
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 4.5e-56 225.3 354 44.9
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 7.1e-54 218.0 423 37.8
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.0e-52 214.2 159 67.9
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 9.0e-49 201.1 349 39.8
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 2.0e-48 199.9 153 67.3
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 8.7e-44 184.5 132 66.7
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.1e-41 177.6 468 28.4
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 3.1e-41 176.0 174 60.3
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 3.1e-41 176.0 174 60.3
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 3.1e-41 176.0 174 60.3
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 3.1e-41 176.0 174 60.3
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 5.5e-38 165.2 170 53.5
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.3e-36 160.6 116 71.6
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.1e-36 158.7 125 67.2
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-30 139.8 123 65.9
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 2.3e-28 133.3 155 51.0
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.3e-27 129.4 323 32.5
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.1e-25 124.4 235 37.0
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.0e-23 117.9 491 27.1
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 3.8e-23 115.9 657 19.9
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.9e-22 113.6 116 58.6
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 8.8e-20 104.8 75 66.7
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.7e-18 100.5 68 76.5
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 1.8e-17 97.1 75 65.3
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.7e-15 90.5 77 61.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.9e-15 89.7 177 35.0
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 1.5e-14 87.4 277 30.7
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 8.0e-13 81.6 115 44.3
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.0e-12 79.3 201 28.4
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 4.4e-11 75.9 68 60.3
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.4e-11 75.9 44 86.4
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 5.7e-11 75.5 55 63.6
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 7.5e-11 75.1 100 50.0
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 9.7e-11 74.7 92 51.1
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.3e-10 74.3 54 59.3
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.2e-10 73.6 46 76.1
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 3.7e-10 72.8 54 72.2
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.3e-10 72.0 50 74.0
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 1.1e-09 71.2 54 66.7
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 1.1e-09 71.2 75 48.0
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 1.4e-09 70.9 48 75.0
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 1.4e-09 70.9 68 58.8
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 2.4e-09 70.1 54 68.5
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.2e-08 67.8 93 46.2
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 1.3e-07 64.3 41 78.0
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 2.2e-07 63.5 95 37.9
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.5e-07 61.6 62 46.8
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 3.2e-06 59.7 67 53.7
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 9.4e-06 58.2 47 57.4


User provided reference genes

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