Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 1.5e-144 516.2 253 100.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 2.8e-127 458.8 241 94.6
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 7.6e-101 370.9 241 76.3
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 1.3e-92 343.6 207 83.1
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 5.5e-75 285.0 244 59.0
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.4e-73 280.4 242 57.9
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 1.8e-73 280.0 240 57.1
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 3.0e-73 279.3 242 57.0
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 1.1e-72 277.3 242 56.6
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 1.5e-72 276.9 239 56.9
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 4.4e-72 275.4 240 56.2
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 9.7e-72 274.2 244 55.3
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 1.7e-71 273.5 244 53.7
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 1.7e-71 273.5 239 55.6
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.7e-71 273.5 244 55.7
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 2.2e-71 273.1 242 55.4
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 2.8e-71 272.7 242 55.8
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 4.8e-71 271.9 242 56.2
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 6.3e-71 271.6 240 56.7
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 6.3e-71 271.6 246 53.7
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.1e-70 270.8 239 54.4
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.4e-70 270.4 242 55.0
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 2.4e-70 269.6 241 56.0
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 2.4e-70 269.6 241 53.9
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 2.4e-70 269.6 244 54.5
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 2.4e-70 269.6 244 53.7
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 2.4e-70 269.6 239 54.0
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 2.4e-70 269.6 240 54.6
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 3.1e-70 269.2 241 53.5
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 4.1e-70 268.9 242 55.0
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 5.3e-70 268.5 257 52.5
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 1.6e-69 266.9 241 53.1
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.6e-69 266.9 241 53.1
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.6e-69 266.9 241 53.1
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 1.6e-69 266.9 243 53.5
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 2.0e-69 266.5 242 54.1
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.0e-69 266.5 241 53.1
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 2.6e-69 266.2 241 55.6
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 3.5e-69 265.8 244 54.1
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 3.5e-69 265.8 243 56.4
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 3.5e-69 265.8 246 54.1
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 4.5e-69 265.4 244 55.3
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 5.9e-69 265.0 240 55.4
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 5.9e-69 265.0 242 52.9
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 5.9e-69 265.0 244 53.3
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.7e-69 264.6 241 53.5
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 1.0e-68 264.2 245 55.1
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 1.3e-68 263.8 244 54.1
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 1.3e-68 263.8 242 55.8
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.3e-68 263.8 241 52.7
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 1.7e-68 263.5 245 55.1
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 1.7e-68 263.5 244 53.3
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 1.7e-68 263.5 242 53.3
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 2.2e-68 263.1 244 55.3
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 2.2e-68 263.1 239 53.1
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 2.2e-68 263.1 246 52.4
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 2.2e-68 263.1 263 50.6
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 3.8e-68 262.3 244 53.7
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 5.0e-68 261.9 235 54.0
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 8.5e-68 261.2 242 52.5
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 1.5e-67 260.4 243 54.3
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 1.5e-67 260.4 244 52.9
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.9e-67 260.0 241 53.9
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.9e-67 260.0 241 53.1
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.9e-67 260.0 244 52.9
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 4.2e-67 258.8 242 53.3
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 4.2e-67 258.8 239 54.0
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 9.4e-67 257.7 244 50.4
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 1.2e-66 257.3 240 51.2
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 1.6e-66 256.9 246 54.1
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 2.1e-66 256.5 242 53.7
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 2.1e-66 256.5 239 53.1
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.1e-66 256.5 229 54.6
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 2.7e-66 256.1 244 50.0
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 3.6e-66 255.8 252 53.6
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 3.6e-66 255.8 242 52.5
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 8.0e-66 254.6 239 52.3
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 8.0e-66 254.6 239 52.3
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 2.3e-65 253.1 239 52.7
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 4.0e-65 252.3 239 51.0
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 6.7e-65 251.5 246 52.0
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 6.7e-65 251.5 243 55.1
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 8.8e-65 251.1 242 54.5
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 8.8e-65 251.1 243 52.7
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 2.0e-64 250.0 239 53.1
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 2.0e-64 250.0 249 51.4
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 2.6e-64 249.6 234 53.8
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 3.3e-64 249.2 248 52.0
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 4.4e-64 248.8 245 52.2
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 4.4e-64 248.8 249 52.2
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 4.4e-64 248.8 239 51.0
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 5.7e-64 248.4 249 52.2
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 5.7e-64 248.4 246 51.6
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 5.7e-64 248.4 238 50.8
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 7.5e-64 248.1 246 52.4
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 7.5e-64 248.1 244 53.3
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 9.7e-64 247.7 242 53.7
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.3e-63 247.3 246 52.0
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 1.7e-63 246.9 242 54.1
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 2.8e-63 246.1 246 50.4
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 2.8e-63 246.1 246 52.4
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 3.7e-63 245.7 238 52.5
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 3.7e-63 245.7 247 54.3
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 8.2e-63 244.6 246 51.2
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 1.8e-62 243.4 246 50.4
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 3.1e-62 242.7 242 52.9
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 4.1e-62 242.3 246 52.0
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 4.1e-62 242.3 242 52.1
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 7.0e-62 241.5 247 51.0
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 1.6e-61 240.4 239 51.0
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 1.6e-61 240.4 248 51.2
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 2.0e-61 240.0 242 53.7
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 2.0e-61 240.0 242 53.7
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 4.5e-61 238.8 242 52.9
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 4.5e-61 238.8 242 52.9
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 4.5e-61 238.8 242 52.9
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 5.9e-61 238.4 249 50.6
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 1.0e-60 237.7 246 49.6
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 1.3e-60 237.3 246 50.0
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 2.2e-60 236.5 242 53.3
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 2.2e-60 236.5 242 52.5
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 2.2e-60 236.5 242 53.3
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 2.2e-60 236.5 242 53.3
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 2.9e-60 236.1 242 52.5
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 2.5e-59 233.0 244 50.0
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.2e-58 230.7 242 51.7
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.6e-58 230.3 246 49.6
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 3.6e-58 229.2 240 49.6
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 1.4e-57 227.3 263 48.7
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 2.0e-56 223.4 209 52.2
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 2.0e-56 223.4 246 48.4
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 5.7e-56 221.9 246 49.2
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 9.8e-56 221.1 212 51.9
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 6.3e-55 218.4 237 51.1
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.1e-54 216.1 244 48.4
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 9.1e-54 214.5 244 46.7
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.8e-52 209.1 244 46.3
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.6e-50 203.8 240 48.3
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 1.4e-49 200.7 235 46.0
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 2.3e-49 199.9 244 45.5
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 8.9e-49 198.0 242 45.0
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 3.1e-46 189.5 253 43.1
Zm00001eb291570 Zea mays HOM05D003460 ORTHO05D004277 1.2e-40 171.0 88 94.3
Zm00001eb245130 Zea mays HOM05D003460 ORTHO05D004277 2.6e-40 169.9 90 97.8
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 4.4e-40 169.1 204 42.6
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 4.9e-39 165.6 193 47.7
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 3.0e-36 156.4 276 35.5
Zm00001eb373730 Zea mays HOM05D003460 ORTHO05D004277 6.2e-34 148.7 77 92.2
Zm00001eb156420 Zea mays HOM05D003460 ORTHO05D004277 1.4e-33 147.5 77 92.2
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 5.2e-33 145.6 90 74.4
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 2.3e-28 130.2 87 71.3
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 3.3e-27 126.3 88 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 7.3e-19 98.6 128 42.2
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 6.8e-17 92.0 88 47.7
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.5e-16 90.9 76 53.9
SHI13450 Sapria himalayana HOM05D003460 ORTHO05D000014 2.4e-09 67.0 42 66.7
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 2.4e-09 67.0 37 73.0
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 4.9e-07 59.3 28 92.9
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 4.9e-07 59.3 28 92.9
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 4.9e-07 59.3 28 92.9
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 8.4e-07 58.5 37 70.3
Haze_15504 Corylus avellana HOM05D003460 ORTHO05D004277 5.4e-06 55.8 38 65.8


User provided reference genes

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