Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb382400 Zea mays HOM05D000805 ORTHO05D050018 4.6e-78 294.7 166 100.0
Os06g0473800 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D050018 1.3e-27 127.1 141 62.4
ClCG10G013940 Citrullus lanatus HOM05D000805 ORTHO05D000624 2.0e-12 76.6 148 35.8
MELO3C009988.2 Cucumis melo HOM05D000805 ORTHO05D000624 2.5e-12 76.3 148 35.1
CsaV3_3G042750 Cucumis sativus L. HOM05D000805 ORTHO05D000624 3.3e-12 75.9 148 35.8
Ciclev10016997m.g Citrus clementina HOM05D000805 ORTHO05D000624 5.3e-10 68.6 151 31.1
Solyc03g112440.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 6.9e-10 68.2 130 36.2
PGSC0003DMG400018176 Solanum tuberosum HOM05D000805 ORTHO05D000624 9.1e-10 67.8 130 36.2
Nitab4.5_0009528g0030 Nicotiana tabacum HOM05D000805 ORTHO05D000624 1.2e-09 67.4 130 35.4
CAN.G473.6 Capsicum annuum HOM05D000805 ORTHO05D000624 1.5e-09 67.0 154 35.1
Lsat_1_v5_gn_4_77001 Lactuca sativa HOM05D000805 ORTHO05D000624 1.5e-09 67.0 156 35.9
Oeu024712.1 Olea europaea HOM05D000805 ORTHO05D000624 1.5e-09 67.0 121 37.2
Peaxi162Scf00089g00152 Petunia axillaris HOM05D000805 ORTHO05D000624 1.5e-09 67.0 100 42.0
Sopen03g031520 Solanum pennellii HOM05D000805 ORTHO05D000624 2.6e-09 66.2 130 35.4
DCAR_016034 Daucus carota HOM05D000805 ORTHO05D000624 3.4e-09 65.9 118 39.0
RcHm_v2.0_Chr2g0172931 Rosa chinensis HOM05D000805 ORTHO05D000624 3.4e-09 65.9 143 34.3
Nitab4.5_0006802g0010 Nicotiana tabacum HOM05D000805 ORTHO05D000624 4.5e-09 65.5 159 35.2
Duzib187G0131 Durio zibethinus HOM05D000805 ORTHO05D000624 5.9e-09 65.1 124 34.7
Manes.17G112800 Manihot esculenta HOM05D000805 ORTHO05D000624 5.9e-09 65.1 151 35.8
Nn1g00854 Nelumbo nucifera HOM05D000805 ORTHO05D000624 5.9e-09 65.1 93 45.2
Nitab4.5_0005021g0030 Nicotiana tabacum HOM05D000805 ORTHO05D000624 5.9e-09 65.1 124 34.7
CANSAT80G0440 Cannabis sativa HOM05D000805 ORTHO05D000624 7.7e-09 64.7 145 33.8
Atru.chr6.2284 Acer truncatum HOM05D000805 ORTHO05D000624 1.0e-08 64.3 155 31.6
PGSC0003DMG400012628 Solanum tuberosum HOM05D000805 ORTHO05D000624 1.3e-08 63.9 124 35.5
SGA_v2.0_scaffold44G16579 Striga asiatica HOM05D000805 ORTHO05D000624 1.3e-08 63.9 120 43.3
CAN.G1148.6 Capsicum annuum HOM05D000805 ORTHO05D000624 2.2e-08 63.2 111 37.8
Hma1.2p1_0502F.1_g167740 Hydrangea macrophylla HOM05D000805 ORTHO05D000624 2.2e-08 63.2 93 47.3
Os03g0699000 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D000624 2.2e-08 63.2 90 48.9
Peaxi162Scf00129g01528 Petunia axillaris HOM05D000805 ORTHO05D000624 2.2e-08 63.2 152 35.5
CANSAT21G1803 Cannabis sativa HOM05D000805 ORTHO05D000624 2.9e-08 62.8 124 34.7
CAN.G338.15 Capsicum annuum HOM05D000805 ORTHO05D000624 2.9e-08 62.8 100 39.0
Lj7P598T21 Lonicera japonica HOM05D000805 ORTHO05D000624 2.9e-08 62.8 128 35.2
Lj1g0001254 Lotus japonicus HOM05D000805 ORTHO05D000624 2.9e-08 62.8 95 38.9
Aa31LG5G10730 Aethionema arabicum HOM05D000001 ORTHO05D000003 5.0e-08 62.0 153 30.1
Glyma.05G004300 Glycine max HOM05D000805 ORTHO05D000624 5.0e-08 62.0 109 42.2
Nitab4.5_0000025g0420 Nicotiana tabacum HOM05D000805 ORTHO05D000624 5.0e-08 62.0 130 35.4
Potri.001G080000 Populus trichocarpa HOM05D000805 ORTHO05D000624 5.0e-08 62.0 90 43.3
DCAR_021717 Daucus carota HOM05D000805 ORTHO05D000624 6.5e-08 61.6 118 39.0
Rhsim08G0051300 Rhododendron simsii HOM05D000805 ORTHO05D000624 6.5e-08 61.6 112 34.8
Cfa007378 Carpinus fangiana HOM05D000805 ORTHO05D000624 8.5e-08 61.2 145 31.7
Thhalv10021571m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 8.5e-08 61.2 153 32.0
Rhsim08G0175900 Rhododendron simsii HOM05D000805 ORTHO05D000624 8.5e-08 61.2 121 38.8
Solyc12g010920.2 Solanum lycopersicum HOM05D000805 ORTHO05D000624 8.5e-08 61.2 118 35.6
Lalb_Chr12g0201801 Lupinus albus HOM05D000805 ORTHO05D000624 1.1e-07 60.8 84 46.4
Manes.06G131000 Manihot esculenta HOM05D000805 ORTHO05D000624 1.1e-07 60.8 98 40.8
Sopen12g006280 Solanum pennellii HOM05D000805 ORTHO05D000624 1.1e-07 60.8 118 35.6
ClCG09G019230 Citrullus lanatus HOM05D000805 ORTHO05D000624 1.4e-07 60.5 151 31.1
Gohir.A09G028800 Gossypium hirsutum HOM05D000805 ORTHO05D000624 1.4e-07 60.5 124 34.7
Nitab4.5_0002624g0010 Nicotiana tabacum HOM05D000805 ORTHO05D000624 1.4e-07 60.5 143 31.5
Nitab4.5_0005418g0020 Nicotiana tabacum HOM05D000805 ORTHO05D000624 1.4e-07 60.5 156 35.9
Sopen02g031210 Solanum pennellii HOM05D000805 ORTHO05D000624 1.4e-07 60.5 124 33.1
Actinidia31770 Actinidia chinensis HOM05D000805 ORTHO05D000624 1.9e-07 60.1 115 39.1
CSS0010348 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 1.9e-07 60.1 124 37.1
CANSAT56G2548 Cannabis sativa HOM05D000805 ORTHO05D000624 1.9e-07 60.1 86 45.3
Cpa.g.sc110.15 Carica papaya HOM05D000805 ORTHO05D000624 1.9e-07 60.1 83 43.4
ClCG01G004720 Citrullus lanatus HOM05D000805 ORTHO05D000624 1.9e-07 60.1 91 45.1
FAN10G3456 Fragaria x ananassa HOM05D000805 ORTHO05D000624 1.9e-07 60.1 87 46.0
Psat3g163120 Pisum sativum HOM05D000805 ORTHO05D000624 1.9e-07 60.1 122 32.0
THA.LOC104802395 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 1.9e-07 60.1 146 32.2
Gohir.D09G028300 Gossypium hirsutum HOM05D000805 ORTHO05D000624 2.5e-07 59.7 124 34.7
Gorai.006G033000 Gossypium raimondii HOM05D000805 ORTHO05D000624 2.5e-07 59.7 124 34.7
MBI04_g33724_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 2.5e-07 59.7 90 44.4
MBI04_g41759_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 2.5e-07 59.7 90 44.4
Oeu063474.1 Olea europaea HOM05D000805 ORTHO05D000624 2.5e-07 59.7 124 33.9
Peaxi162Scf00700g00422 Petunia axillaris HOM05D000805 ORTHO05D000624 2.5e-07 59.7 118 38.1
PGR142G4011 Punica granatum HOM05D000805 ORTHO05D000624 2.5e-07 59.7 151 30.5
Sc03g0007530 Simmondsia chinensis HOM05D000805 ORTHO05D000624 2.5e-07 59.7 121 33.9
CSS0035197 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 3.2e-07 59.3 124 37.1
Carub.0003s0050 Capsella rubella HOM05D000805 ORTHO05D000624 3.2e-07 59.3 153 30.7
ECA238G1961 Erigeron canadensis HOM05D000805 ORTHO05D000624 3.2e-07 59.3 121 33.9
FvH4_7g26900 Fragaria vesca HOM05D000805 ORTHO05D000624 3.2e-07 59.3 116 37.9
FAN06G5020 Fragaria x ananassa HOM05D000805 ORTHO05D000624 3.2e-07 59.3 116 37.9
FAN08G1080 Fragaria x ananassa HOM05D000805 ORTHO05D000624 3.2e-07 59.3 93 39.8
Lj4g0019300 Lotus japonicus HOM05D000805 ORTHO05D000624 3.2e-07 59.3 84 44.0
Nn4g22652 Nelumbo nucifera HOM05D000805 ORTHO05D000624 3.2e-07 59.3 140 32.9
QL10p008051 Quercus lobata HOM05D000805 ORTHO05D000624 3.2e-07 59.3 152 33.6
Solyc02g086490.3 Solanum lycopersicum HOM05D000805 ORTHO05D000624 3.2e-07 59.3 124 32.3
TAR629G3054 Trochodendron aralioides HOM05D000805 ORTHO05D000624 3.2e-07 59.3 93 44.1
CiPaw.08G042000 Carya illinoinensis HOM05D000805 ORTHO05D000624 4.2e-07 58.9 90 45.6
Ca_08362_v3 Cicer arietinum L. HOM05D000805 ORTHO05D000624 4.2e-07 58.9 89 38.2
COL.COLO4_29100 Corchorus olitorius HOM05D000805 ORTHO05D000624 4.2e-07 58.9 154 35.1
Medtr7g033775 Medicago truncatula HOM05D000805 ORTHO05D000624 4.2e-07 58.9 122 31.1
Nitab4.5_0010114g0020 Nicotiana tabacum HOM05D000805 ORTHO05D000624 5.5e-07 58.5 156 35.9
PSO017G5620 Papaver somniferum HOM05D000805 ORTHO05D000624 5.5e-07 58.5 116 37.1
PSO478G1041 Papaver somniferum HOM05D000805 ORTHO05D000624 5.5e-07 58.5 116 37.1
CSS0030466 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 7.2e-07 58.2 93 43.0
MELO3C021576.2 Cucumis melo HOM05D000805 ORTHO05D000624 7.2e-07 58.2 121 33.1
Dinv06599 Davidia involucrata HOM05D000805 ORTHO05D000624 7.2e-07 58.2 93 44.1
Dinv20614 Davidia involucrata HOM05D000805 ORTHO05D000624 7.2e-07 58.2 93 38.7
FvH4_5g05960 Fragaria vesca HOM05D000805 ORTHO05D000624 7.2e-07 58.2 115 36.5
FAN03G1505 Fragaria x ananassa HOM05D000805 ORTHO05D000624 7.2e-07 58.2 87 44.8
FAN04G0721 Fragaria x ananassa HOM05D000805 ORTHO05D000624 7.2e-07 58.2 93 39.8
Lalb_Chr02g0150801 Lupinus albus HOM05D000805 ORTHO05D000624 7.2e-07 58.2 83 42.2
Potri.001G345800 Populus trichocarpa HOM05D000805 ORTHO05D000624 7.2e-07 58.2 129 33.3
RcHm_v2.0_Chr7g0192881 Rosa chinensis HOM05D000805 ORTHO05D000624 7.2e-07 58.2 93 40.9
Sabra15G0105500 Salix brachista HOM05D000805 ORTHO05D000624 7.2e-07 58.2 83 43.4
Sc22g0000890 Simmondsia chinensis HOM05D000805 ORTHO05D000624 7.2e-07 58.2 90 43.3
Zm00001eb216880 Zea mays HOM05D000805 ORTHO05D000624 7.2e-07 58.2 110 42.7
Haze_14732 Corylus avellana HOM05D000805 ORTHO05D000624 9.4e-07 57.8 129 31.8
CsaV3_5G027160 Cucumis sativus L. HOM05D000805 ORTHO05D000624 9.4e-07 57.8 121 33.1
DCAR_018075 Daucus carota HOM05D000805 ORTHO05D000624 9.4e-07 57.8 78 50.0
Potri.015G081901 Populus trichocarpa HOM05D000805 ORTHO05D000624 9.4e-07 57.8 106 37.7
Potri.T125308 Populus trichocarpa HOM05D000805 ORTHO05D000624 9.4e-07 57.8 106 37.7
QL02p074868 Quercus lobata HOM05D000805 ORTHO05D000624 9.4e-07 57.8 86 38.4
AT3G01570 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 1.2e-06 57.4 153 29.4
FAN18G4211 Fragaria x ananassa HOM05D000805 ORTHO05D000624 1.2e-06 57.4 115 35.7
Gohir.D07G229400 Gossypium hirsutum HOM05D000805 ORTHO05D000624 1.2e-06 57.4 123 33.3
Gorai.001G264500 Gossypium raimondii HOM05D000805 ORTHO05D000624 1.2e-06 57.4 123 33.3
Lsat_1_v5_gn_8_9800 Lactuca sativa HOM05D000805 ORTHO05D000624 1.2e-06 57.4 93 41.9
MBI16_g23849_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 1.2e-06 57.4 86 41.9
Manes.06G108600 Manihot esculenta HOM05D000805 ORTHO05D000624 1.2e-06 57.4 121 33.9
FAN01G1750 Fragaria x ananassa HOM05D000805 ORTHO05D000624 1.6e-06 57.0 122 37.7
Potri.017G071800 Populus trichocarpa HOM05D000805 ORTHO05D000624 1.6e-06 57.0 124 34.7
SGA_v2.0_scaffold135G34900 Striga asiatica HOM05D000805 ORTHO05D000624 1.6e-06 57.0 124 33.9
TAR374G0719 Trochodendron aralioides HOM05D000805 ORTHO05D000624 1.6e-06 57.0 124 33.1
HPP92_014687 Vanilla planifolia HOM05D000805 ORTHO05D000624 1.6e-06 57.0 75 49.3
Actinidia35767 Actinidia chinensis HOM05D000060 ORTHO05D000624 2.1e-06 56.6 85 41.2
Cpa.g.sc13.249 Carica papaya HOM05D000805 ORTHO05D000624 2.1e-06 56.6 90 42.2
AUR62008167 Chenopodium quinoa HOM05D000805 ORTHO05D000624 2.1e-06 56.6 124 33.9
Migut.F00529 Erythranthe guttata HOM05D000805 ORTHO05D000624 2.1e-06 56.6 97 39.2
Glyma.16G071800 Glycine max HOM05D000805 ORTHO05D000624 2.1e-06 56.6 90 37.8
HanXRQChr14g0450531 Helianthus annuus HOM05D000805 ORTHO05D000624 2.1e-06 56.6 124 33.9
SHI17177 Sapria himalayana HOM05D000805 ORTHO05D000624 2.1e-06 56.6 154 33.1
TWI14G1264 Tripterygium wilfordii HOM05D000805 ORTHO05D000624 2.1e-06 56.6 97 40.2
BolC2t11502H Brassica oleracea HOM05D000805 ORTHO05D000624 2.7e-06 56.2 132 31.8
Lj5P128T47 Lonicera japonica HOM05D000805 ORTHO05D000624 2.7e-06 56.2 85 41.2
Lalb_Chr06g0175801 Lupinus albus HOM05D000805 ORTHO05D000624 2.7e-06 56.2 121 32.2
Lalb_Chr21g0312721 Lupinus albus HOM05D000805 ORTHO05D000624 2.7e-06 56.2 93 38.7
Manes.15G149800 Manihot esculenta HOM05D000805 ORTHO05D000624 2.7e-06 56.2 124 33.9
PGR142G3461 Punica granatum HOM05D000805 ORTHO05D000624 2.7e-06 56.2 93 40.9
Sp2g16790 Schrenkiella parvula HOM05D000805 ORTHO05D000624 2.7e-06 56.2 132 31.8
Sopen06g010720 Solanum pennellii HOM05D000805 ORTHO05D000624 2.7e-06 56.2 90 43.3
SGA_v2.0_scaffold25G10809 Striga asiatica HOM05D000805 ORTHO05D000624 2.7e-06 56.2 93 39.8
THA.LOC104805374 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 2.7e-06 56.2 114 35.1
vmacro09924 Vaccinium macrocarpon HOM05D000805 ORTHO05D000624 2.7e-06 56.2 93 40.9
Actinidia33335 Actinidia chinensis HOM05D000805 ORTHO05D000624 3.6e-06 55.8 134 33.6
C03p39560 Brassica napus HOM05D000001 ORTHO05D000003 3.6e-06 55.8 153 30.7
BolC3t16223H Brassica oleracea HOM05D000001 ORTHO05D000003 3.6e-06 55.8 153 30.7
COL.COLO4_30152 Corchorus olitorius HOM05D000805 ORTHO05D000624 3.6e-06 55.8 133 29.3
DCAR_015060 Daucus carota HOM05D000805 ORTHO05D000624 3.6e-06 55.8 81 42.0
Gohir.A07G222700 Gossypium hirsutum HOM05D000805 ORTHO05D000624 3.6e-06 55.8 123 32.5
SalBow1G6321 Salvia bowleyana HOM05D000805 ORTHO05D000624 3.6e-06 55.8 152 34.2
Sp3g00480 Schrenkiella parvula HOM05D000805 ORTHO05D000624 3.6e-06 55.8 115 34.8
SGA_v2.0_scaffold56G19908 Striga asiatica HOM05D000805 ORTHO05D000624 3.6e-06 55.8 94 40.4
TPR.G12313 Trifolium pratense HOM05D000805 ORTHO05D000624 3.6e-06 55.8 92 42.4
VMungo1383G3142 Vigna mungo HOM05D000805 ORTHO05D000624 3.6e-06 55.8 88 35.2
Cc02_g04750 Coffea canephora HOM05D000805 ORTHO05D000624 4.7e-06 55.5 93 43.0
Haze_07560 Corylus avellana HOM05D000805 ORTHO05D000624 4.7e-06 55.5 115 35.7
Lj2g0021390 Lotus japonicus HOM05D000805 ORTHO05D000624 4.7e-06 55.5 124 30.6
Solyc06g034040.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 4.7e-06 55.5 90 42.2
TPR.G37564 Trifolium pratense HOM05D000805 ORTHO05D000624 4.7e-06 55.5 115 34.8
Atru.chr9.2549 Acer truncatum HOM05D000805 ORTHO05D000624 6.1e-06 55.1 113 36.3
BcaB03g12456 Brassica carinata HOM05D000805 ORTHO05D000624 6.1e-06 55.1 149 30.2
COL.COLO4_37336 Corchorus olitorius HOM05D000805 ORTHO05D000624 6.1e-06 55.1 82 43.9
Haze_22208 Corylus avellana HOM05D000805 ORTHO05D000624 6.1e-06 55.1 90 43.3
MBI10_g00732_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D002520 6.1e-06 55.1 86 36.0
Oeu006088.1 Olea europaea HOM05D000805 ORTHO05D000624 6.1e-06 55.1 82 48.8
Sed0003039 Sechium edule HOM05D000805 ORTHO05D000624 6.1e-06 55.1 148 30.4
PGSC0003DMG400021587 Solanum tuberosum HOM05D000805 ORTHO05D000624 6.1e-06 55.1 90 41.1
TAR629G3395 Trochodendron aralioides HOM05D000225 ORTHO05D002520 6.1e-06 55.1 148 34.5
AL3G10580 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 7.9e-06 54.7 115 32.2
BcaC03g17477 Brassica carinata HOM05D000805 ORTHO05D000624 7.9e-06 54.7 132 31.1
C02p54410 Brassica napus HOM05D000805 ORTHO05D000624 7.9e-06 54.7 132 31.1
CSS0014477 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 7.9e-06 54.7 92 43.5
CSS0044328 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 7.9e-06 54.7 92 43.5
Ca_21952_v3 Cicer arietinum L. HOM05D000805 ORTHO05D000624 7.9e-06 54.7 113 38.1
HanXRQChr07g0205601 Helianthus annuus HOM05D000805 ORTHO05D000624 7.9e-06 54.7 90 42.2
Medtr3g109190 Medicago truncatula HOM05D000805 ORTHO05D000624 7.9e-06 54.7 86 45.3
Nitab4.5_0010435g0010 Nicotiana tabacum HOM05D000805 ORTHO05D000624 7.9e-06 54.7 93 39.8
Peaxi162Scf00255g00091 Petunia axillaris HOM05D000805 ORTHO05D000624 7.9e-06 54.7 124 31.5
RcHm_v2.0_Chr1g0373571 Rosa chinensis HOM05D000805 ORTHO05D000624 7.9e-06 54.7 148 35.8
TPR.G1123 Trifolium pratense HOM05D000805 ORTHO05D000624 7.9e-06 54.7 124 29.8


User provided reference genes

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