Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb382110 Zea mays HOM05D002860 ORTHO05D003123 1.9e-122 442.6 227 100.0
Zm00001eb150690 Zea mays HOM05D002860 ORTHO05D003123 1.6e-121 439.5 227 99.1
Zm00001eb101950 Zea mays HOM05D002860 ORTHO05D003123 1.5e-108 396.4 229 90.0
Zm00001eb316810 Zea mays HOM05D002860 ORTHO05D003123 2.2e-83 312.8 227 74.0
Os09g0491676 Oryza sativa ssp. japonica HOM05D002860 ORTHO05D003123 1.0e-67 260.8 235 64.7
Os08g0510800 Oryza sativa ssp. japonica HOM05D002860 ORTHO05D003123 1.2e-28 131.0 253 39.1
Aqoxy2G00083 Aquilegia oxysepala HOM05D002860 ORTHO05D003123 7.2e-18 95.1 147 38.8
MBI01_g01348_MAGBIO Magnolia biondii HOM05D002860 ORTHO05D003123 1.2e-17 94.4 209 33.5
Cpa.g.sc85.75 Carica papaya HOM05D002860 ORTHO05D003123 1.6e-17 94.0 197 36.5
PGR004G1986 Punica granatum HOM05D002860 ORTHO05D003123 7.5e-15 85.1 222 35.1
Gohir.A04G048700 Gossypium hirsutum HOM05D002860 ORTHO05D003123 9.8e-15 84.7 185 33.0
Duzib106G0036 Durio zibethinus HOM05D002860 ORTHO05D003123 1.3e-14 84.3 199 32.2
Thecc.05G170400 Theobroma cacao HOM05D002860 ORTHO05D003123 1.3e-14 84.3 201 31.8
TAR623G0275 Trochodendron aralioides HOM05D002860 ORTHO05D003123 1.3e-14 84.3 210 32.9
Duzib093G1712 Durio zibethinus HOM05D002860 ORTHO05D003123 2.2e-14 83.6 189 32.8
Gorai.006G066800 Gossypium raimondii HOM05D002860 ORTHO05D003123 2.2e-14 83.6 189 32.3
Gohir.D04G098300 Gossypium hirsutum HOM05D002860 ORTHO05D003123 2.9e-14 83.2 189 32.3
Cfa020178 Carpinus fangiana HOM05D002860 ORTHO05D003123 8.3e-14 81.6 188 31.9
CiPaw.09G031000 Carya illinoinensis HOM05D002860 ORTHO05D003123 1.4e-13 80.9 201 34.3
Manes.04G138500 Manihot esculenta HOM05D002860 ORTHO05D003123 1.8e-13 80.5 215 30.7
TWI74G1238 Tripterygium wilfordii HOM05D002860 ORTHO05D003123 4.1e-13 79.3 196 33.7
Glyma.09G112400 Glycine max HOM05D002860 ORTHO05D003123 9.2e-13 78.2 183 32.2
HPP92_019677 Vanilla planifolia HOM05D002860 ORTHO05D003123 9.2e-13 78.2 135 37.0
Glyma.02G174300 Glycine max HOM05D002860 ORTHO05D003123 1.6e-12 77.4 189 33.3
Potri.006G191800 Populus trichocarpa HOM05D002860 ORTHO05D003123 1.6e-12 77.4 206 30.1
vmacro07924 Vaccinium macrocarpon HOM05D002860 ORTHO05D003123 1.6e-12 77.4 225 30.7
Potri.016G046900 Populus trichocarpa HOM05D002860 ORTHO05D003123 2.0e-12 77.0 174 36.2
Phvul.007G259100 Phaseolus vulgaris HOM05D002860 ORTHO05D003123 2.7e-12 76.6 191 34.0
RcHm_v2.0_Chr3g0479871 Rosa chinensis HOM05D002860 ORTHO05D003123 3.5e-12 76.3 188 34.6
Actinidia22029 Actinidia chinensis HOM05D002860 ORTHO05D003123 5.9e-12 75.5 139 36.0
Gohir.A09G088000 Gossypium hirsutum HOM05D002860 ORTHO05D003123 1.0e-11 74.7 190 33.2
Prupe.7G076000 Prunus persica HOM05D002860 ORTHO05D003123 1.0e-11 74.7 192 33.3
CANSAT64G0384 Cannabis sativa HOM05D002860 ORTHO05D003123 1.3e-11 74.3 185 35.1
TAR369G0455 Trochodendron aralioides HOM05D002860 ORTHO05D003123 1.3e-11 74.3 129 33.3
Gorai.006G104300 Gossypium raimondii HOM05D002860 ORTHO05D003123 1.7e-11 73.9 190 32.1
QL07p023492 Quercus lobata HOM05D002860 ORTHO05D003123 3.9e-11 72.8 204 31.4
THA.LOC104802510 Tarenaya hassleriana HOM05D002860 ORTHO05D003123 3.9e-11 72.8 213 33.3
VMungo0720G2237 Vigna mungo HOM05D002860 ORTHO05D003123 3.9e-11 72.8 186 31.7
DCAR_019842 Daucus carota HOM05D002860 ORTHO05D003123 5.0e-11 72.4 132 36.4
Gohir.D09G087800 Gossypium hirsutum HOM05D002860 ORTHO05D003123 5.0e-11 72.4 190 32.1
Ca_25704_v3 Cicer arietinum L. HOM05D002860 ORTHO05D003123 6.6e-11 72.0 137 35.8
SalBow6G5077 Salvia bowleyana HOM05D002860 ORTHO05D003123 6.6e-11 72.0 142 38.0
CSS0014167 Camellia sinensis var. sinensis HOM05D002860 ORTHO05D003123 8.6e-11 71.6 187 32.1
Lalb_Chr05g0217951 Lupinus albus HOM05D002860 ORTHO05D003123 8.6e-11 71.6 149 33.6
MD12G1059200 Malus domestica HOM05D002860 ORTHO05D003123 8.6e-11 71.6 195 31.3
CARHR168310 Cardamine hirsuta HOM05D002860 ORTHO05D003123 1.5e-10 70.9 220 30.5
Dinv14286 Davidia involucrata HOM05D002860 ORTHO05D003123 1.9e-10 70.5 146 32.9
Lj5g0001504 Lotus japonicus HOM05D002860 ORTHO05D003123 1.9e-10 70.5 170 34.1
THA.LOC104824470 Tarenaya hassleriana HOM05D002860 ORTHO05D003123 2.5e-10 70.1 210 31.4
Ciclev10012101m.g Citrus clementina HOM05D002860 ORTHO05D003123 3.3e-10 69.7 196 30.6
Rhsim03G0007100 Rhododendron simsii HOM05D002860 ORTHO05D003123 3.3e-10 69.7 132 34.8
Sabra06G0146800 Salix brachista HOM05D002860 ORTHO05D003123 3.3e-10 69.7 221 31.2
Atru.chr8.1087 Acer truncatum HOM05D002860 ORTHO05D003123 4.3e-10 69.3 227 30.0
Aa31LG1G24080 Aethionema arabicum HOM05D002860 ORTHO05D003123 4.3e-10 69.3 139 34.5
Cc06_g16030 Coffea canephora HOM05D002860 ORTHO05D003123 4.3e-10 69.3 149 32.9
Hma1.2p1_0183F.1_g080830 Hydrangea macrophylla HOM05D002860 ORTHO05D003123 4.3e-10 69.3 149 32.2
MD14G1058800 Malus domestica HOM05D002860 ORTHO05D003123 7.3e-10 68.6 138 35.5
Aa31LG10G12700 Aethionema arabicum HOM05D002860 ORTHO05D003123 9.5e-10 68.2 208 29.3
AL5G39640 Arabidopsis lyrata HOM05D002860 ORTHO05D003123 9.5e-10 68.2 207 29.0
Migut.K00039 Erythranthe guttata HOM05D002860 ORTHO05D003123 1.2e-09 67.8 153 36.6
Medtr1g053910 Medicago truncatula HOM05D002860 ORTHO05D003123 1.6e-09 67.4 167 32.9
SGA_v2.0_scaffold274G46479 Striga asiatica HOM05D002860 ORTHO05D003123 1.6e-09 67.4 156 35.9
SGA_v2.0_scaffold94G28421 Striga asiatica HOM05D002860 ORTHO05D003123 1.6e-09 67.4 172 33.7
Manes.11G028000 Manihot esculenta HOM05D002860 ORTHO05D003123 2.8e-09 66.6 132 39.4
Sabra16G0050800 Salix brachista HOM05D002860 ORTHO05D003123 2.8e-09 66.6 165 32.1
Sp5g04730 Schrenkiella parvula HOM05D002860 ORTHO05D003123 3.6e-09 66.2 214 29.4
Carub.0005s2483 Capsella rubella HOM05D002860 ORTHO05D003123 8.0e-09 65.1 213 29.1
Dinv24084 Davidia involucrata HOM05D002860 ORTHO05D003123 8.0e-09 65.1 149 32.2
Lalb_Chr16g0383041 Lupinus albus HOM05D002860 ORTHO05D003123 8.0e-09 65.1 132 34.1
BcaC02g09976 Brassica carinata HOM05D002860 ORTHO05D003123 1.0e-08 64.7 215 28.4
BcaC02g09979 Brassica carinata HOM05D002860 ORTHO05D003123 1.0e-08 64.7 215 28.4
BolC4t25002H Brassica oleracea HOM05D002860 ORTHO05D003123 1.0e-08 64.7 215 28.4
FAN05G0251 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.4e-08 64.3 189 31.2
FAN05G0768 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.4e-08 64.3 189 31.2
PGSC0003DMG400023673 Solanum tuberosum HOM05D002860 ORTHO05D003123 1.4e-08 64.3 138 35.5
C04p34400 Brassica napus HOM05D002860 ORTHO05D003123 2.3e-08 63.5 215 27.9
Thhalv10006049m.g Eutrema salsugineum HOM05D002860 ORTHO05D003123 2.3e-08 63.5 211 27.0
CARHR137210 Cardamine hirsuta HOM05D002860 ORTHO05D003123 3.1e-08 63.2 192 29.7
ATR0605G156 Amborella trichopoda HOM05D002860 ORTHO05D003123 6.8e-08 62.0 189 30.2
A04p02810 Brassica napus HOM05D002860 ORTHO05D003123 6.8e-08 62.0 207 28.5
FAN02G0218 Fragaria x ananassa HOM05D002860 ORTHO05D003123 6.8e-08 62.0 158 34.2
MSTRG.10840 Avicennia marina HOM05D002860 ORTHO05D003123 8.9e-08 61.6 133 35.3
FAN09G4377 Fragaria x ananassa HOM05D002860 ORTHO05D003123 8.9e-08 61.6 117 37.6
Nitab4.5_0003600g0050 Nicotiana tabacum HOM05D002860 ORTHO05D003123 8.9e-08 61.6 136 34.6
MSTRG.26086 Avicennia marina HOM05D002860 ORTHO05D003123 1.2e-07 61.2 158 33.5
Nitab4.5_0004991g0010 Nicotiana tabacum HOM05D002860 ORTHO05D003123 1.2e-07 61.2 186 31.2
Sopen10g031010 Solanum pennellii HOM05D002860 ORTHO05D003123 1.2e-07 61.2 193 30.6
BraA04t16005Z Brassica rapa HOM05D002860 ORTHO05D003123 1.5e-07 60.8 208 27.9
Solyc10g080470.1 Solanum lycopersicum HOM05D002860 ORTHO05D003123 1.5e-07 60.8 194 30.9
BcaB02g08284 Brassica carinata HOM05D002860 ORTHO05D003123 5.8e-07 58.9 210 27.6
Oeu007769.1 Olea europaea HOM05D002860 ORTHO05D003123 5.8e-07 58.9 149 34.9
Lsat_1_v5_gn_5_163060 Lactuca sativa HOM05D002860 ORTHO05D003123 7.5e-07 58.5 135 31.9
AT3G57990 Arabidopsis thaliana HOM05D002860 ORTHO05D003123 9.8e-07 58.2 131 29.8
CAN.G128.37 Capsicum annuum HOM05D002860 ORTHO05D003123 9.8e-07 58.2 132 34.8
AUR62024309 Chenopodium quinoa HOM05D002860 ORTHO05D003123 1.3e-06 57.8 136 31.6
Nn7g36020 Nelumbo nucifera HOM05D002860 ORTHO05D003123 1.3e-06 57.8 135 31.1
Peaxi162Scf00480g00002 Petunia axillaris HOM05D002860 ORTHO05D003123 1.3e-06 57.8 157 30.6
Dinv43930 Davidia involucrata HOM05D002860 ORTHO05D003123 1.7e-06 57.4 128 34.4
BraA09t40528Z Brassica rapa HOM05D002860 ORTHO05D003123 2.2e-06 57.0 200 29.5
HanXRQChr13g0390301 Helianthus annuus HOM05D002860 ORTHO05D003123 2.2e-06 57.0 144 31.9
Ah.04g152420 Amaranthus hybridus HOM05D002860 ORTHO05D003123 3.7e-06 56.2 126 31.7
CDE07G1195 Ceratophyllum demersum HOM05D002860 ORTHO05D003123 4.9e-06 55.8 141 29.8
FvH4_6g22460 Fragaria vesca HOM05D002860 ORTHO05D003123 4.9e-06 55.8 161 33.5
unitig_26.g8903 Utricularia gibba HOM05D002860 ORTHO05D003123 6.4e-06 55.5 129 35.7
CDE04G3293 Ceratophyllum demersum HOM05D002860 ORTHO05D003123 8.3e-06 55.1 165 27.3
ECA248G1415 Erigeron canadensis HOM05D002860 ORTHO05D003123 8.3e-06 55.1 135 30.4


User provided reference genes

Program Settings