Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb381760 Zea mays HOM05D002482 ORTHO05D002594 1.4e-70 269.6 152 100.0
Os06g0320300 Oryza sativa ssp. japonica HOM05D002482 ORTHO05D002594 3.0e-36 155.6 153 70.6
Zm00001eb252770 Zea mays HOM05D002482 ORTHO05D002594 4.9e-18 95.1 151 53.6
Zm00001eb189020 Zea mays HOM05D002482 ORTHO05D002594 7.0e-17 91.3 151 53.0
Os02g0717200 Oryza sativa ssp. japonica HOM05D002482 ORTHO05D002594 2.0e-16 89.7 147 53.7
Zm00001eb083130 Zea mays HOM05D002482 ORTHO05D002594 2.3e-15 86.3 151 51.7
Zm00001eb006280 Zea mays HOM05D002482 ORTHO05D002594 1.1e-14 84.0 151 51.7
Zm00001eb285300 Zea mays HOM05D002482 ORTHO05D002594 2.8e-13 79.3 149 50.3
Duzib170G0550 Durio zibethinus HOM05D002482 ORTHO05D002594 3.6e-13 79.0 151 46.4
TAR369G1015 Trochodendron aralioides HOM05D002482 ORTHO05D002594 1.4e-12 77.0 153 47.1
ClCG03G013620 Citrullus lanatus HOM05D002482 ORTHO05D002594 1.8e-12 76.6 151 47.0
Haze_23038 Corylus avellana HOM05D002482 ORTHO05D002594 2.3e-12 76.3 151 45.0
MBI04_g32793_MAGBIO Magnolia biondii HOM05D002482 ORTHO05D002594 3.0e-12 75.9 151 45.0
TWI60G0941 Tripterygium wilfordii HOM05D002482 ORTHO05D002594 4.0e-12 75.5 151 43.7
MELO3C015682.2 Cucumis melo HOM05D002482 ORTHO05D002594 5.2e-12 75.1 153 45.1
CsaV3_1G042450 Cucumis sativus L. HOM05D002482 ORTHO05D002594 5.2e-12 75.1 153 45.1
MD11G1024200 Malus domestica HOM05D002482 ORTHO05D002594 1.5e-11 73.6 151 45.0
Potri.T085200 Populus trichocarpa HOM05D002482 ORTHO05D002594 2.6e-11 72.8 151 45.0
Prupe.6G020200 Prunus persica HOM05D002482 ORTHO05D002594 2.6e-11 72.8 151 47.0
MBI01_g20397_MAGBIO Magnolia biondii HOM05D002482 ORTHO05D002594 3.4e-11 72.4 151 45.7
RcHm_v2.0_Chr5g0077891 Rosa chinensis HOM05D002482 ORTHO05D002594 3.4e-11 72.4 151 46.4
Sabra03G0154000 Salix brachista HOM05D002482 ORTHO05D002594 4.4e-11 72.0 151 43.0
TAR623G0302 Trochodendron aralioides HOM05D002482 ORTHO05D002594 4.4e-11 72.0 153 45.1
Sabra01G0010600 Salix brachista HOM05D002482 ORTHO05D002594 5.7e-11 71.6 151 44.4
Potri.003G211200 Populus trichocarpa HOM05D002482 ORTHO05D002594 7.5e-11 71.2 151 44.4
TAR633G2740 Trochodendron aralioides HOM05D002482 ORTHO05D002594 7.5e-11 71.2 151 44.4
MBI18_g27541_MAGBIO Magnolia biondii HOM05D002482 ORTHO05D002594 2.9e-10 69.3 151 45.0
Sed0013064 Sechium edule HOM05D002482 ORTHO05D002594 2.9e-10 69.3 156 46.8
Gohir.D06G112200 Gossypium hirsutum HOM05D002482 ORTHO05D002594 3.7e-10 68.9 149 42.3
MBI07_g38549_MAGBIO Magnolia biondii HOM05D002482 ORTHO05D002594 4.9e-10 68.6 151 44.4
QL07p023255 Quercus lobata HOM05D002482 ORTHO05D002594 4.9e-10 68.6 151 43.0
TWI34G0028 Tripterygium wilfordii HOM05D002482 ORTHO05D002594 4.9e-10 68.6 151 41.1
Atru.chr3.2481 Acer truncatum HOM05D002482 ORTHO05D002594 6.4e-10 68.2 149 45.0
Ciclev10017123m.g Citrus clementina HOM05D002482 ORTHO05D002594 6.4e-10 68.2 149 43.0
TAR636G3241 Trochodendron aralioides HOM05D002482 ORTHO05D002594 8.3e-10 67.8 151 44.4
MSTRG.17570 Avicennia marina HOM05D002482 ORTHO05D002594 1.8e-09 66.6 150 41.3
Gorai.010G128000 Gossypium raimondii HOM05D002482 ORTHO05D002594 1.8e-09 66.6 149 40.9
FAN11G3364 Fragaria x ananassa HOM05D002482 ORTHO05D002594 3.2e-09 65.9 151 43.0
CANSAT54G1212 Cannabis sativa HOM05D002482 ORTHO05D002594 4.1e-09 65.5 151 41.1
Lalb_Chr14g0372381 Lupinus albus HOM05D002482 ORTHO05D002594 4.1e-09 65.5 153 43.8
CiPaw.13G167200 Carya illinoinensis HOM05D002482 ORTHO05D002594 7.0e-09 64.7 151 41.1
QL01p007129 Quercus lobata HOM05D002482 ORTHO05D002594 7.0e-09 64.7 152 42.1
MD03G1021700 Malus domestica HOM05D002482 ORTHO05D002594 9.2e-09 64.3 151 41.1
Medtr2g098560 Medicago truncatula HOM05D002482 ORTHO05D002594 9.2e-09 64.3 151 39.7
Ca_01268_v3 Cicer arietinum L. HOM05D002482 ORTHO05D002594 1.2e-08 63.9 151 39.7
Eucgr.B03652 Eucalyptus grandis HOM05D002482 ORTHO05D002594 1.2e-08 63.9 151 41.7
Dinv14279 Davidia involucrata HOM05D002482 ORTHO05D002594 1.6e-08 63.5 151 43.0
Duzib150G0288 Durio zibethinus HOM05D002482 ORTHO05D002594 1.6e-08 63.5 151 43.0
Glyma.15G031200 Glycine max HOM05D002482 ORTHO05D002594 1.6e-08 63.5 151 37.7
FvH4_3g43480 Fragaria vesca HOM05D002482 ORTHO05D002594 2.0e-08 63.2 151 43.7
Potri.001G015000 Populus trichocarpa HOM05D002482 ORTHO05D002594 2.0e-08 63.2 151 39.7
Haze_19967 Corylus avellana HOM05D002482 ORTHO05D002594 2.7e-08 62.8 151 43.0
THA.LOC104802478 Tarenaya hassleriana HOM05D002482 ORTHO05D002594 2.7e-08 62.8 150 40.0
TWI32G0211 Tripterygium wilfordii HOM05D002482 ORTHO05D002594 2.7e-08 62.8 151 39.1
Actinidia09385 Actinidia chinensis HOM05D002482 ORTHO05D002594 3.5e-08 62.4 151 38.4
Cfa016904 Carpinus fangiana HOM05D002482 ORTHO05D002594 3.5e-08 62.4 151 42.4
FAN21G3143 Fragaria x ananassa HOM05D002482 ORTHO05D002594 4.6e-08 62.0 147 42.2
Glyma.13G343200 Glycine max HOM05D002482 ORTHO05D002594 4.6e-08 62.0 151 37.1
MBI02_g29739_MAGBIO Magnolia biondii HOM05D002482 ORTHO05D002594 4.6e-08 62.0 151 43.7
CSS0050309 Camellia sinensis var. sinensis HOM05D002482 ORTHO05D002594 7.8e-08 61.2 151 37.7
Dinv36314 Davidia involucrata HOM05D002482 ORTHO05D002594 7.8e-08 61.2 151 41.1
Psat1g007440 Pisum sativum HOM05D002482 ORTHO05D002594 7.8e-08 61.2 151 39.7
Sed0019726 Sechium edule HOM05D002482 ORTHO05D002594 7.8e-08 61.2 154 40.9
TPR.G18866 Trifolium pratense HOM05D002482 ORTHO05D002594 1.0e-07 60.8 149 38.9
BcaB02g07565 Brassica carinata HOM05D002482 ORTHO05D002594 1.3e-07 60.5 152 41.4
COL.COLO4_38439 Corchorus olitorius HOM05D002482 ORTHO05D002594 1.3e-07 60.5 151 41.1
CiPaw.14G125600 Carya illinoinensis HOM05D002482 ORTHO05D002594 1.7e-07 60.1 151 42.4
PSO339G2218 Papaver somniferum HOM05D002482 ORTHO05D002594 2.3e-07 59.7 151 41.1
Peaxi162Scf00612g00122 Petunia axillaris HOM05D000001 ORTHO05D010419 3.0e-07 59.3 151 41.1
Phvul.005G151900 Phaseolus vulgaris HOM05D002482 ORTHO05D002594 3.0e-07 59.3 151 37.7
Dinv08056 Davidia involucrata HOM05D002482 ORTHO05D002594 3.9e-07 58.9 151 40.4
Duzib168G0719 Durio zibethinus HOM05D002482 ORTHO05D002594 5.0e-07 58.5 151 40.4
Eucgr.J00835 Eucalyptus grandis HOM05D002482 ORTHO05D002594 5.0e-07 58.5 148 39.2
HanXRQChr01g0021081 Helianthus annuus HOM05D002482 ORTHO05D002594 5.0e-07 58.5 152 42.1
CAN.G1071.3 Capsicum annuum HOM05D002482 ORTHO05D002594 6.6e-07 58.2 152 42.1
FAN16G3054 Fragaria x ananassa HOM05D002482 ORTHO05D002594 6.6e-07 58.2 147 42.9
Lj3g0009151 Lotus japonicus HOM05D002482 ORTHO05D002594 6.6e-07 58.2 153 41.2
VMungo1080G0530 Vigna mungo HOM05D002482 ORTHO05D002594 8.6e-07 57.8 151 37.1
MBI02_g15228_MAGBIO Magnolia biondii HOM05D002482 ORTHO05D002594 1.1e-06 57.4 151 38.4
Nitab4.5_0004499g0020 Nicotiana tabacum HOM05D002482 ORTHO05D002594 1.1e-06 57.4 151 37.7
Nitab4.5_0000006g0620 Nicotiana tabacum HOM05D002482 ORTHO05D002594 1.5e-06 57.0 151 41.7
Thecc.09G221400 Theobroma cacao HOM05D002482 ORTHO05D002594 1.5e-06 57.0 149 40.3
Manes.06G169100 Manihot esculenta HOM05D002482 ORTHO05D002594 2.5e-06 56.2 151 39.1
CDE07G0076 Ceratophyllum demersum HOM05D000159 ORTHO05D000148 3.3e-06 55.8 151 39.1
TWI74G0336 Tripterygium wilfordii HOM05D002482 ORTHO05D002594 3.3e-06 55.8 150 37.3
Actinidia20306 Actinidia chinensis HOM05D002482 ORTHO05D002594 4.3e-06 55.5 151 37.1
Aqoxy1G00163 Aquilegia oxysepala HOM05D002482 ORTHO05D002594 5.6e-06 55.1 151 39.1
Atru.chr8.1067 Acer truncatum HOM05D002482 ORTHO05D002594 7.3e-06 54.7 154 38.3
ATR0605G251 Amborella trichopoda HOM05D002482 ORTHO05D002594 7.3e-06 54.7 152 42.8
Manes.14G014800 Manihot esculenta HOM05D002482 ORTHO05D002594 7.3e-06 54.7 151 39.1
Sabra03G0156500 Salix brachista HOM05D002482 ORTHO05D002594 7.3e-06 54.7 151 37.7
Duzib093G0057 Durio zibethinus HOM05D002482 ORTHO05D002594 9.5e-06 54.3 151 39.1
Phvul.011G055600 Phaseolus vulgaris HOM05D002482 ORTHO05D002594 9.5e-06 54.3 153 38.6


User provided reference genes

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