Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb381660 Zea mays HOM05D006621 ORTHO05D008425 0.0e+00 1210.3 628 100.0
Os06g0320100 Oryza sativa ssp. japonica HOM05D006621 ORTHO05D008425 1.0e-247 860.1 630 75.2
Zm00001eb381720 Zea mays HOM05D006621 ORTHO05D008425 8.7e-239 830.5 443 100.0
PGR142G0547 Punica granatum HOM05D006621 ORTHO05D008425 3.6e-176 622.5 634 55.2
Nn1g01946 Nelumbo nucifera HOM05D006621 ORTHO05D008425 2.9e-173 612.8 637 54.5
Medtr1g053520 Medicago truncatula HOM05D006621 ORTHO05D008425 6.4e-173 611.7 633 55.8
Ciclev10011385m.g Citrus clementina HOM05D006621 ORTHO05D008425 1.1e-172 610.9 634 54.7
Eucgr.K01826 Eucalyptus grandis HOM05D006621 ORTHO05D008425 1.1e-172 610.9 628 55.1
Cc00_g14610 Coffea canephora HOM05D006621 ORTHO05D008425 4.1e-172 609.0 636 53.6
CSS0004967 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D008425 1.2e-171 607.4 642 54.4
Lsat_1_v5_gn_5_164180 Lactuca sativa HOM05D006621 ORTHO05D008425 1.2e-171 607.4 629 54.5
Dinv24092 Davidia involucrata HOM05D006621 ORTHO05D008425 3.5e-171 605.9 638 54.5
Glyma.02G176900 Glycine max HOM05D006621 ORTHO05D008425 3.5e-171 605.9 632 54.4
TPR.G24898 Trifolium pratense HOM05D006621 ORTHO05D008425 3.5e-171 605.9 632 54.3
Nitab4.5_0000016g0290 Nicotiana tabacum HOM05D006621 ORTHO05D008425 3.9e-170 602.4 629 55.0
GSVIVG01033523001 Vitis vinifera HOM05D006621 ORTHO05D008425 6.6e-170 601.7 636 54.6
arahy.Tifrunner.gnm1.ann1.G78CS5 Arachis hypogaea HOM05D006621 ORTHO05D008425 8.6e-170 601.3 634 54.3
Lj5g0023768 Lotus japonicus HOM05D006621 ORTHO05D008425 4.3e-169 599.0 637 53.2
Ca_26117_v3 Cicer arietinum L. HOM05D006621 ORTHO05D008425 7.3e-169 598.2 630 54.1
RcHm_v2.0_Chr3g0480241 Rosa chinensis HOM05D006621 ORTHO05D008425 7.3e-169 598.2 633 55.3
CAN.G691.11 Capsicum annuum HOM05D006621 ORTHO05D008425 9.5e-169 597.8 633 54.5
Hma1.2p1_0005F.1_g004290 Hydrangea macrophylla HOM05D006621 ORTHO05D008425 2.8e-168 596.3 624 54.2
ECA248G1459 Erigeron canadensis HOM05D006621 ORTHO05D008425 3.6e-168 595.9 634 52.2
MD14G1060600 Malus domestica HOM05D006621 ORTHO05D008425 3.6e-168 595.9 633 55.0
MSTRG.6466 Avicennia marina HOM05D006621 ORTHO05D008425 4.7e-168 595.5 640 53.0
PSO339G6474 Papaver somniferum HOM05D006621 ORTHO05D008425 6.2e-168 595.1 639 53.4
FAN09G2006 Fragaria x ananassa HOM05D006621 ORTHO05D008425 2.3e-167 593.2 632 54.9
Lalb_Chr21g0317041 Lupinus albus HOM05D006621 ORTHO05D008425 2.3e-167 593.2 632 53.8
CiPaw.09G032000 Carya illinoinensis HOM05D006621 ORTHO05D008425 4.0e-167 592.4 636 53.3
QL07p023160 Quercus lobata HOM05D006621 ORTHO05D008425 4.0e-167 592.4 637 53.5
Thecc.05G168600 Theobroma cacao HOM05D006621 ORTHO05D008425 5.2e-167 592.0 639 53.8
FvH4_6g22670 Fragaria vesca HOM05D006621 ORTHO05D008425 6.8e-167 591.7 634 54.9
Manes.09G032200 Manihot esculenta HOM05D006621 ORTHO05D008425 1.2e-166 590.9 638 52.2
Potri.006G059500 Populus trichocarpa HOM05D006621 ORTHO05D008425 1.5e-166 590.5 637 52.9
Cfa016900 Carpinus fangiana HOM05D006621 ORTHO05D008425 2.6e-166 589.7 627 53.9
FAN02G3731 Fragaria x ananassa HOM05D006621 ORTHO05D008425 3.4e-166 589.3 634 55.0
COL.COLO4_36135 Corchorus olitorius HOM05D006621 ORTHO05D008425 7.5e-166 588.2 639 53.2
ClCG04G002310 Citrullus lanatus HOM05D006621 ORTHO05D008425 9.9e-166 587.8 631 53.7
Sed0013147 Sechium edule HOM05D006621 ORTHO05D008425 1.3e-165 587.4 633 53.2
Oeu008113.1 Olea europaea HOM05D006621 ORTHO05D008425 1.7e-165 587.0 640 53.4
FAN05G4150 Fragaria x ananassa HOM05D006621 ORTHO05D008425 2.2e-165 586.6 634 54.9
Gohir.A09G126800 Gossypium hirsutum HOM05D006621 ORTHO05D008425 2.9e-165 586.3 637 53.7
Gohir.D09G123264 Gossypium hirsutum HOM05D006621 ORTHO05D008425 3.7e-165 585.9 637 53.4
Sopen03g013060 Solanum pennellii HOM05D006621 ORTHO05D008425 4.9e-165 585.5 631 53.4
Ah.13g076080 Amaranthus hybridus HOM05D006621 ORTHO05D008425 6.4e-165 585.1 635 53.4
PSO384G1846 Papaver somniferum HOM05D006621 ORTHO05D008425 6.4e-165 585.1 639 53.8
FAN14G1344 Fragaria x ananassa HOM05D006621 ORTHO05D008425 8.3e-165 584.7 649 53.8
Gorai.006G141700 Gossypium raimondii HOM05D006621 ORTHO05D008425 8.3e-165 584.7 637 53.2
Aqoxy1G00197 Aquilegia oxysepala HOM05D006621 ORTHO05D008425 1.4e-164 583.9 640 53.1
FAN14G0291 Fragaria x ananassa HOM05D006621 ORTHO05D008425 3.2e-164 582.8 628 54.9
Lju124A29T46 Lonicera japonica HOM05D006621 ORTHO05D008425 4.1e-164 582.4 638 52.7
HanXRQChr01g0009671 Helianthus annuus HOM05D006621 ORTHO05D008425 5.4e-164 582.0 628 52.1
Atru.chr8.1052 Acer truncatum HOM05D006621 ORTHO05D008425 7.1e-164 581.6 638 53.0
Actinidia38574 Actinidia chinensis HOM05D006621 ORTHO05D008425 2.7e-163 579.7 640 52.3
THA.LOC104799308 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 7.8e-163 578.2 639 52.4
Haze_19963 Corylus avellana HOM05D006621 ORTHO05D008425 1.7e-162 577.0 622 53.2
Glyma.10G091600 Glycine max HOM05D006621 ORTHO05D008425 1.7e-162 577.0 633 53.1
Migut.J01819 Erythranthe guttata HOM05D006621 ORTHO05D008425 3.0e-162 576.2 634 52.2
CsaV3_4G030430 Cucumis sativus L. HOM05D006621 ORTHO05D008425 3.9e-162 575.9 635 52.1
Sabra06G0042800 Salix brachista HOM05D006621 ORTHO05D008425 1.5e-161 573.9 642 52.0
Sp6g36030 Schrenkiella parvula HOM05D006621 ORTHO05D008425 1.9e-161 573.5 634 52.7
BcaC06g32538 Brassica carinata HOM05D006621 ORTHO05D008425 5.6e-161 572.0 635 52.6
Duzib128G0108 Durio zibethinus HOM05D006621 ORTHO05D008425 5.6e-161 572.0 638 52.4
EL10Ac3g06943 Beta vulgaris HOM05D006621 ORTHO05D008425 9.5e-161 571.2 629 52.5
Aa31LG11G7690 Aethionema arabicum HOM05D006621 ORTHO05D008425 2.1e-160 570.1 632 52.4
Rhsim04G0097900 Rhododendron simsii HOM05D006621 ORTHO05D008425 2.8e-160 569.7 638 51.6
arahy.Tifrunner.gnm1.ann1.ZJT11U Arachis hypogaea HOM05D006621 ORTHO05D008425 3.6e-160 569.3 706 48.9
Phvul.007G257900 Phaseolus vulgaris HOM05D006621 ORTHO05D008425 4.7e-160 568.9 633 52.4
SalBow6G6334 Salvia bowleyana HOM05D006621 ORTHO05D008425 4.7e-160 568.9 631 52.8
Sc13g0002140 Simmondsia chinensis HOM05D006621 ORTHO05D008425 4.7e-160 568.9 635 52.0
HPP92_015468 Vanilla planifolia HOM05D006621 ORTHO05D008425 6.2e-160 568.5 640 51.6
VMungo0720G2363 Vigna mungo HOM05D006621 ORTHO05D008425 6.8e-159 565.1 634 52.5
CANSAT64G2439 Cannabis sativa HOM05D006621 ORTHO05D008425 8.9e-159 564.7 645 51.5
Carub.0006s0572 Capsella rubella HOM05D006621 ORTHO05D008425 1.2e-158 564.3 632 51.7
Hund19192 Selenicereus undatus HOM05D006621 ORTHO05D008425 2.0e-158 563.5 658 50.5
AT5G06830 Arabidopsis thaliana HOM05D006621 ORTHO05D008425 5.8e-158 562.0 630 51.7
CARHR206340 Cardamine hirsuta HOM05D006621 ORTHO05D008425 9.9e-158 561.2 640 51.4
AL6G16950 Arabidopsis lyrata HOM05D006621 ORTHO05D008425 1.7e-157 560.5 634 51.9
MELO3C008903.2 Cucumis melo HOM05D006621 ORTHO05D008425 3.8e-157 559.3 635 51.2
TWI74G0211 Tripterygium wilfordii HOM05D006621 ORTHO05D008425 4.9e-157 558.9 635 52.0
Thhalv10013160m.g Eutrema salsugineum HOM05D006621 ORTHO05D008425 1.4e-156 557.4 634 51.7
ATR0605G120 Amborella trichopoda HOM05D006621 ORTHO05D008425 5.1e-154 548.9 641 51.0
A10p29540 Brassica napus HOM05D006621 ORTHO05D008425 8.1e-152 541.6 635 50.2
BraA10t44997Z Brassica rapa HOM05D006621 ORTHO05D008425 8.1e-152 541.6 635 50.2
BcaC06g32399 Brassica carinata HOM05D006621 ORTHO05D008425 1.2e-150 537.7 633 50.2
C09p69910 Brassica napus HOM05D006621 ORTHO05D008425 1.2e-150 537.7 633 50.2
BolC9t59734H Brassica oleracea HOM05D006621 ORTHO05D008425 1.2e-150 537.7 633 50.2
CDE10G0898 Ceratophyllum demersum HOM05D006621 ORTHO05D008425 4.4e-150 535.8 632 50.2
Nitab4.5_0003572g0080 Nicotiana tabacum HOM05D006621 ORTHO05D008425 4.3e-145 519.2 630 49.8
vmacro09106 Vaccinium macrocarpon HOM05D006621 ORTHO05D008425 1.8e-143 513.8 512 55.7
AUR62024325 Chenopodium quinoa HOM05D006621 ORTHO05D008425 4.5e-142 509.2 636 48.1
AUR62012064 Chenopodium quinoa HOM05D006621 ORTHO05D008425 3.2e-140 503.1 598 49.5
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 1.9e-137 493.8 589 49.9
Prupe.7G073900 Prunus persica HOM05D006621 ORTHO05D008425 1.6e-136 490.7 629 48.3
Peaxi162Scf00258g00117 Petunia axillaris HOM05D006621 ORTHO05D008425 9.9e-134 481.5 546 51.6
Psat6g126120 Pisum sativum HOM05D006621 ORTHO05D008425 9.3e-132 474.9 573 48.3
Mapoly0080s0041 Marchantia polymorpha HOM05D006621 ORTHO05D008425 1.8e-106 391.0 643 38.1
AagrBONN_evm.TU.Sc2ySwM_228.2467 Anthoceros agrestis HOM05D006621 ORTHO05D008425 8.8e-106 388.7 624 39.3
Cpa.g.sc85.87 Carica papaya HOM05D006621 ORTHO05D008425 8.5e-101 372.1 477 47.4
Eucgr.D02420 Eucalyptus grandis HOM05D006621 ORTHO05D008425 1.2e-99 368.2 406 53.7
Pp3c23_21740 Physcomitrium patens HOM05D006621 ORTHO05D008425 1.8e-90 337.8 647 34.3
SMO134G0088 Selaginella moellendorffii HOM05D006621 ORTHO05D008425 6.8e-90 335.9 619 36.7
CBR_g3749 Chara braunii HOM05D006621 ORTHO05D008425 1.9e-84 317.8 659 33.5
TAR636G0143 Trochodendron aralioides HOM05D006621 ORTHO05D008425 1.8e-82 311.2 302 56.0
Solyc03g059030.4 Solanum lycopersicum HOM05D006621 ORTHO05D008425 5.0e-77 293.1 302 57.3
MD12G1060300 Malus domestica HOM05D006621 ORTHO05D008425 1.0e-74 285.4 287 53.0
TAR636G2274 Trochodendron aralioides HOM05D006621 ORTHO05D008425 1.1e-71 275.4 305 57.0
MD12G1060400 Malus domestica HOM05D006621 ORTHO05D008425 1.4e-66 258.5 231 65.4
DCAR_019796 Daucus carota HOM05D006621 ORTHO05D008425 2.5e-60 237.7 192 62.0
Lsat_1_v5_gn_1_107121 Lactuca sativa HOM05D006621 ORTHO05D008425 6.2e-59 233.0 367 42.2
SEGI_27578 Sequoiadendron giganteum HOM05D006621 ORTHO05D008425 4.0e-50 203.8 239 44.4
CAN.G654.6 Capsicum annuum HOM05D006621 ORTHO05D008425 6.8e-50 203.0 185 61.1
Oeu033745.1 Olea europaea HOM05D006621 ORTHO05D008425 1.3e-45 188.7 177 60.5
Cre01.g047229 Chlamydomonas reinhardtii HOM05D006621 ORTHO05D008425 2.4e-42 177.9 644 26.4
RcHm_v2.0_Chr3g0476251 Rosa chinensis HOM05D006621 ORTHO05D008425 2.9e-32 144.4 156 55.8
Lsat_1_v5_gn_5_170341 Lactuca sativa HOM05D006621 ORTHO05D008425 9.3e-31 139.4 154 48.7
FAN02G0678 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.4e-15 89.0 66 59.1
CSS0033542 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D043305 4.8e-11 73.9 50 78.0
DCAR_028612 Daucus carota HOM05D006621 ORTHO05D008425 3.8e-08 64.3 42 73.8


User provided reference genes

Program Settings