Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 7.4e-59 230.3 116 100.0
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.2e-21 106.7 60 95.0
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 3.4e-19 98.6 60 86.7
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 6.5e-15 84.3 60 75.0
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 7.5e-11 70.9 69 62.3
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 7.5e-11 70.9 60 63.3
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.2e-10 69.3 60 66.7
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.8e-10 68.9 69 59.4
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 2.8e-10 68.9 60 66.7
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 2.8e-10 68.9 60 61.7
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 4.8e-10 68.2 69 59.4
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 8.3e-10 67.4 70 58.6
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.1e-09 67.0 58 67.2
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.4e-09 66.6 69 58.0
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 1.4e-09 66.6 60 61.7
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 1.8e-09 66.2 69 59.4
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 1.8e-09 66.2 60 56.7
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-09 65.9 78 55.1
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 2.4e-09 65.9 78 55.1
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 2.4e-09 65.9 78 55.1
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 3.1e-09 65.5 60 63.3
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 3.1e-09 65.5 69 56.5
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.1e-09 65.5 71 53.5
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 3.1e-09 65.5 60 63.3
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 3.1e-09 65.5 60 61.7
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 3.1e-09 65.5 60 61.7
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 4.1e-09 65.1 78 55.1
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 4.1e-09 65.1 69 56.5
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 4.1e-09 65.1 69 58.0
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 4.1e-09 65.1 69 53.6
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 4.1e-09 65.1 60 63.3
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 5.4e-09 64.7 78 53.8
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 5.4e-09 64.7 69 55.1
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 7.0e-09 64.3 60 63.3
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 7.0e-09 64.3 69 58.0
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 7.0e-09 64.3 69 58.0
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 7.0e-09 64.3 69 58.0
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 7.0e-09 64.3 69 58.0
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 7.0e-09 64.3 69 58.0
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 7.0e-09 64.3 61 60.7
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 9.1e-09 63.9 60 61.7
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 9.1e-09 63.9 60 61.7
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 9.1e-09 63.9 70 55.7
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-08 63.5 69 58.0
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.2e-08 63.5 54 70.4
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.2e-08 63.5 69 56.5
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 1.2e-08 63.5 60 63.3
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 1.2e-08 63.5 69 55.1
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.2e-08 63.5 69 55.1
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-08 63.2 78 52.6
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.6e-08 63.2 60 60.0
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.0e-08 62.8 60 61.7
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.0e-08 62.8 70 52.9
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 2.0e-08 62.8 71 53.5
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 2.7e-08 62.4 60 60.0
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 3.5e-08 62.0 69 56.5
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 7.7e-08 60.8 71 50.7
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 7.7e-08 60.8 69 53.6
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 1.0e-07 60.5 69 52.2
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.0e-07 60.5 60 56.7
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 1.0e-07 60.5 60 58.3
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.0e-07 60.5 61 59.0
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.0e-07 60.5 74 51.4
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.3e-07 60.1 69 55.1
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 1.3e-07 60.1 60 58.3
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 1.7e-07 59.7 60 56.7
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.7e-07 59.7 60 58.3
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.7e-07 59.7 60 56.7
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.3e-07 59.3 60 60.0
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 2.3e-07 59.3 60 58.3
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 2.3e-07 59.3 69 52.2
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 2.9e-07 58.9 60 56.7
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.9e-07 58.9 72 51.4
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 3.8e-07 58.5 61 57.4
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 3.8e-07 58.5 61 57.4
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 3.8e-07 58.5 61 55.7
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 3.8e-07 58.5 61 57.4
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 3.8e-07 58.5 61 57.4
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 3.8e-07 58.5 61 57.4
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 3.8e-07 58.5 61 55.7
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 3.8e-07 58.5 69 50.7
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 3.8e-07 58.5 60 58.3
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.8e-07 58.5 60 58.3
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.8e-07 58.5 60 58.3
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.8e-07 58.5 60 58.3
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 3.8e-07 58.5 60 56.7
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 3.8e-07 58.5 69 53.6
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 5.0e-07 58.2 69 49.3
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 5.0e-07 58.2 60 58.3
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 5.0e-07 58.2 60 55.0
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 6.6e-07 57.8 60 53.3
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 6.6e-07 57.8 60 56.7
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 6.6e-07 57.8 60 56.7
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 8.6e-07 57.4 60 55.0
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 8.6e-07 57.4 71 49.3
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 8.6e-07 57.4 71 49.3
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 8.6e-07 57.4 60 55.0
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 1.1e-06 57.0 72 47.2
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.1e-06 57.0 59 55.9
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.1e-06 57.0 69 49.3
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.1e-06 57.0 60 55.0
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 2.5e-06 55.8 60 55.0
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 2.5e-06 55.8 60 55.0
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 2.5e-06 55.8 61 52.5
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 2.5e-06 55.8 61 52.5
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 2.5e-06 55.8 61 52.5
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 2.5e-06 55.8 69 49.3
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 2.5e-06 55.8 60 53.3
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 3.3e-06 55.5 73 46.6
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 5.5e-06 54.7 60 55.0
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 7.2e-06 54.3 60 55.0
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 7.2e-06 54.3 71 46.5
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 9.5e-06 53.9 60 51.7


User provided reference genes

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