Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 4.8e-137 491.1 240 100.0
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.6e-106 389.0 249 77.9
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 6.1e-92 341.3 234 70.9
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.3e-91 339.3 232 69.8
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 5.2e-91 338.2 232 70.3
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 5.2e-91 338.2 232 70.3
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 5.2e-91 338.2 232 71.6
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 6.8e-91 337.8 232 71.1
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 6.8e-91 337.8 224 72.8
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 8.9e-91 337.4 234 69.2
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-90 336.3 224 72.3
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.6e-90 335.9 232 69.0
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.6e-90 335.9 232 69.0
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 4.4e-90 335.1 232 70.3
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 5.7e-90 334.7 236 70.3
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 7.5e-90 334.3 236 70.3
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 9.8e-90 334.0 232 71.1
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.2e-89 332.8 229 70.7
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.2e-89 332.8 229 70.7
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.2e-89 332.8 236 68.2
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.9e-89 332.4 224 72.3
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.9e-89 332.4 230 70.4
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 4.9e-89 331.6 223 71.3
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 4.9e-89 331.6 243 67.9
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 4.9e-89 331.6 236 67.4
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.4e-89 331.3 232 69.8
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 6.4e-89 331.3 236 68.6
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.1e-88 330.5 242 66.1
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.4e-88 330.1 239 66.5
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.4e-88 330.1 232 68.1
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.4e-88 330.1 232 68.1
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.8e-88 329.7 232 69.8
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.2e-88 328.9 232 69.0
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 4.1e-88 328.6 223 71.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 4.1e-88 328.6 224 71.4
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 5.4e-88 328.2 231 68.4
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 7.0e-88 327.8 258 63.6
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.0e-88 327.8 226 69.5
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 9.2e-88 327.4 230 67.8
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 9.2e-88 327.4 220 70.9
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.2e-87 327.0 241 64.7
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.6e-87 326.6 243 65.8
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.6e-87 326.6 230 68.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.0e-87 326.2 230 68.7
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.7e-87 325.9 232 70.3
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.7e-87 325.9 232 66.8
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.5e-87 325.5 234 68.4
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.5e-87 325.5 234 68.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 5.9e-87 324.7 234 67.5
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.0e-86 323.9 240 64.6
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.7e-86 323.2 234 67.5
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 5.0e-86 321.6 234 66.7
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 8.6e-86 320.9 234 67.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 8.6e-86 320.9 228 68.9
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.5e-85 320.1 223 69.1
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 1.9e-85 319.7 236 66.9
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.5e-85 319.3 232 65.9
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 3.3e-85 318.9 206 72.3
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.6e-85 318.2 234 66.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 5.6e-85 318.2 232 66.8
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.3e-85 317.8 251 65.3
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 7.3e-85 317.8 232 65.5
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 7.3e-85 317.8 229 68.1
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.5e-85 317.4 239 65.3
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.5e-85 317.4 206 71.4
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.6e-84 316.6 224 68.8
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 8.0e-84 314.3 242 65.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.0e-83 313.9 225 65.8
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.1e-83 312.4 210 70.5
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 8.9e-83 310.8 232 63.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.2e-82 310.5 224 67.0
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.2e-82 310.5 229 65.1
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.2e-82 310.5 229 65.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.6e-82 309.3 206 68.9
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.6e-82 309.3 240 61.7
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.4e-82 308.5 229 65.1
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 5.8e-82 308.1 217 65.4
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 5.8e-82 308.1 229 64.6
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 9.8e-82 307.4 216 66.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.7e-81 306.6 237 63.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 6.4e-81 304.7 206 68.9
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.4e-81 304.7 229 65.1
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.1e-80 303.9 236 63.6
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.4e-80 302.8 233 63.9
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 5.4e-80 301.6 233 63.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.2e-79 300.4 235 65.1
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.6e-79 300.1 230 64.8
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.7e-79 299.3 233 62.7
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.7e-79 299.3 233 62.7
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.7e-79 299.3 216 64.8
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 3.5e-79 298.9 211 66.8
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.5e-79 298.9 211 66.8
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.6e-79 298.5 233 63.1
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 6.0e-79 298.1 233 63.1
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 6.0e-79 298.1 233 63.1
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 6.0e-79 298.1 236 61.9
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 6.0e-79 298.1 268 56.7
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 7.8e-79 297.7 224 64.3
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-78 297.4 244 61.1
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-78 297.4 233 62.7
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.0e-78 297.4 239 61.9
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.3e-78 297.0 211 66.4
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.3e-78 297.0 210 66.2
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.7e-78 296.6 233 63.1
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.3e-78 296.2 211 66.4
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 6.6e-78 294.7 211 65.9
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.9e-77 293.1 236 60.6
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.9e-77 293.1 234 62.8
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.5e-77 292.7 233 62.7
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 3.3e-77 292.4 234 63.2
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.8e-76 289.3 232 62.5
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.6e-76 288.9 209 66.5
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.2e-76 288.1 234 62.4
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.1e-75 287.3 209 65.1
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.4e-75 287.0 235 61.7
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.0e-75 285.4 229 61.6
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.5e-74 283.5 234 59.0
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.3e-73 280.4 210 64.3
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 5.4e-72 275.0 233 59.7
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 9.2e-72 274.2 236 58.5
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.0e-71 271.6 190 70.5
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.3e-70 269.6 218 60.6
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 2.5e-69 266.2 182 70.3
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.3e-69 264.6 234 59.4
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.2e-66 257.3 177 66.7
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.3e-65 253.8 235 57.9
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.2e-63 247.3 210 57.6
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.7e-62 243.4 232 49.1
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.0e-62 242.7 228 57.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.8e-59 233.4 156 69.2
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 4.9e-57 225.3 232 52.6
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 8.4e-57 224.6 173 65.9
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.4e-56 223.0 202 58.4
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.6e-55 220.3 156 63.5
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 3.0e-54 216.1 160 64.4
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 9.6e-53 211.1 147 72.1
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.4e-51 206.5 222 48.2
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.2e-50 204.1 220 47.3
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.2e-47 194.1 210 48.6
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 6.0e-47 191.8 210 48.1
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.7e-44 182.6 182 50.5
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.5e-42 175.6 118 66.9
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.2e-41 173.3 179 52.5
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 2.4e-40 169.9 123 61.8
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.8e-38 163.7 238 41.2
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.4e-35 153.3 99 67.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 2.5e-32 143.3 151 50.3
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 4.3e-29 132.5 106 66.0
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 7.4e-29 131.7 150 47.3
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.6e-28 130.6 204 37.3
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 2.0e-26 123.6 88 63.6
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 2.7e-23 113.2 86 62.8
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 6.7e-22 108.6 202 31.7
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 5.7e-21 105.5 82 59.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.8e-20 103.2 90 63.3
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-17 93.2 80 65.0
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-16 90.9 67 71.6
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.2e-16 89.7 68 69.1
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 5.5e-16 89.0 72 65.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.5e-16 89.0 68 69.1
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.1e-14 82.4 117 38.5
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-12 77.4 48 77.1
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.8e-12 76.6 64 53.1
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.3e-12 75.5 75 56.0
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 9.4e-08 61.6 40 65.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 6.1e-07 58.9 56 62.5
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 6.1e-07 58.9 145 29.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.0e-06 56.6 55 61.8
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 3.9e-06 56.2 42 61.9


User provided reference genes

Program Settings