Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb380050 Zea mays HOM05D006702 ORTHO05D008540 5.8e-71 270.8 136 100.0
Os06g0264700 Oryza sativa ssp. japonica HOM05D006702 ORTHO05D008540 1.3e-41 173.3 137 72.3
Zm00001eb380040 Zea mays HOM05D006702 ORTHO05D008540 3.1e-32 142.1 114 66.7
Manes.09G067614 Manihot esculenta HOM05D006702 ORTHO05D008540 7.4e-26 120.9 115 60.0
GSVIVG01025733001 Vitis vinifera HOM05D006702 ORTHO05D008540 1.4e-24 116.7 108 61.1
CANSAT80G0135 Cannabis sativa HOM05D006702 ORTHO05D008540 2.4e-24 115.9 123 53.7
TWI77G0937 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 2.4e-24 115.9 97 63.9
ClCG04G009300 Citrullus lanatus HOM05D006702 ORTHO05D008540 5.3e-24 114.8 116 56.0
MELO3C024465.2 Cucumis melo HOM05D006702 ORTHO05D008540 5.3e-24 114.8 116 56.9
TWI53G0904 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 5.3e-24 114.8 108 57.4
THA.LOC104823233 Tarenaya hassleriana HOM05D006702 ORTHO05D008540 9.0e-24 114.0 124 53.2
Gorai.009G414600 Gossypium raimondii HOM05D006702 ORTHO05D008540 1.2e-23 113.6 134 53.0
Actinidia32493 Actinidia chinensis HOM05D006702 ORTHO05D008540 1.5e-23 113.2 112 58.0
CDE05G1201 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 1.5e-23 113.2 111 54.1
Gohir.A04G072000 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.5e-23 113.2 134 53.0
Gohir.D04G110501 Gossypium hirsutum HOM05D006702 ORTHO05D008540 2.0e-23 112.8 100 60.0
Sed0024166 Sechium edule HOM05D006702 ORTHO05D008540 2.0e-23 112.8 123 57.7
Aqoxy2G01772 Aquilegia oxysepala HOM05D006702 ORTHO05D008540 2.6e-23 112.5 97 61.9
Prupe.6G232200 Prunus persica HOM05D006702 ORTHO05D008540 2.6e-23 112.5 106 58.5
CAN.G900.34 Capsicum annuum HOM05D006702 ORTHO05D008540 3.4e-23 112.1 93 63.4
TPR.G11275 Trifolium pratense HOM05D006702 ORTHO05D008540 3.4e-23 112.1 100 61.0
Nn2g13794 Nelumbo nucifera HOM05D006702 ORTHO05D008540 4.5e-23 111.7 110 54.5
Nn2g13797 Nelumbo nucifera HOM05D006702 ORTHO05D008540 4.5e-23 111.7 110 54.5
Thecc.05G066700 Theobroma cacao HOM05D006702 ORTHO05D008540 7.6e-23 110.9 98 61.2
VMungo0720G0934 Vigna mungo HOM05D006702 ORTHO05D008540 1.0e-22 110.5 97 59.8
Glyma.13G142500 Glycine max HOM05D006702 ORTHO05D008540 1.7e-22 109.8 95 60.0
Nitab4.5_0008928g0010 Nicotiana tabacum HOM05D006702 ORTHO05D008540 1.7e-22 109.8 132 49.2
QL07p043496 Quercus lobata HOM05D006702 ORTHO05D008540 2.2e-22 109.4 125 50.4
ATR0171G014 Amborella trichopoda HOM05D006702 ORTHO05D008540 2.9e-22 109.0 95 58.9
Duzib106G0264 Durio zibethinus HOM05D006702 ORTHO05D008540 2.9e-22 109.0 106 58.5
Gorai.006G163300 Gossypium raimondii HOM05D006702 ORTHO05D008540 2.9e-22 109.0 102 55.9
MD04G1093600 Malus domestica HOM05D006702 ORTHO05D008540 2.9e-22 109.0 97 60.8
Nitab4.5_0000578g0200 Nicotiana tabacum HOM05D006702 ORTHO05D008540 2.9e-22 109.0 147 46.3
QL07p043331 Quercus lobata HOM05D006702 ORTHO05D008540 2.9e-22 109.0 126 51.6
Haze_20544 Corylus avellana HOM05D006702 ORTHO05D008540 3.8e-22 108.6 94 62.8
Potri.016G093000 Populus trichocarpa HOM05D006702 ORTHO05D008540 3.8e-22 108.6 115 56.5
RcHm_v2.0_Chr3g0470251 Rosa chinensis HOM05D006702 ORTHO05D008540 3.8e-22 108.6 116 53.4
Cc06_g04220 Coffea canephora HOM05D006702 ORTHO05D008540 5.0e-22 108.2 95 61.1
CsaV3_6G039890 Cucumis sativus L. HOM05D006702 ORTHO05D008540 5.0e-22 108.2 116 54.3
ECA233G1636 Erigeron canadensis HOM05D006702 ORTHO05D008540 5.0e-22 108.2 111 55.0
Gohir.D09G142300 Gossypium hirsutum HOM05D006702 ORTHO05D008540 5.0e-22 108.2 102 54.9
Lalb_Chr06g0171741 Lupinus albus HOM05D006702 ORTHO05D008540 5.0e-22 108.2 99 58.6
Ciclev10012549m.g Citrus clementina HOM05D006702 ORTHO05D008540 6.5e-22 107.8 98 61.2
Migut.L01703 Erythranthe guttata HOM05D006702 ORTHO05D008540 6.5e-22 107.8 120 51.7
CSS0007009 Camellia sinensis var. sinensis HOM05D006702 ORTHO05D008540 8.5e-22 107.5 96 62.5
Gohir.A09G146600 Gossypium hirsutum HOM05D006702 ORTHO05D008540 8.5e-22 107.5 122 48.4
Medtr1g063240 Medicago truncatula HOM05D006702 ORTHO05D008540 8.5e-22 107.5 100 60.0
PGR142G4417 Punica granatum HOM05D006702 ORTHO05D008540 8.5e-22 107.5 112 55.4
Solyc09g008190.3 Solanum lycopersicum HOM05D006702 ORTHO05D008540 8.5e-22 107.5 93 61.3
Sopen09g002990 Solanum pennellii HOM05D006702 ORTHO05D008540 8.5e-22 107.5 93 61.3
PGSC0003DMG400003886 Solanum tuberosum HOM05D006702 ORTHO05D008540 8.5e-22 107.5 93 61.3
Psat6g074160 Pisum sativum HOM05D006702 ORTHO05D008540 1.1e-21 107.1 101 59.4
FAN05G3937 Fragaria x ananassa HOM05D006702 ORTHO05D008540 1.9e-21 106.3 116 52.6
Haze_20547 Corylus avellana HOM05D006702 ORTHO05D008540 2.5e-21 105.9 94 61.7
Eucgr.K02933 Eucalyptus grandis HOM05D006702 ORTHO05D008540 2.5e-21 105.9 116 52.6
Ca_11502_v3 Cicer arietinum L. HOM05D006702 ORTHO05D008540 4.2e-21 105.1 100 58.0
Aa31LG1G21770 Aethionema arabicum HOM05D006702 ORTHO05D008540 7.2e-21 104.4 111 51.4
AUR62040349 Chenopodium quinoa HOM05D006702 ORTHO05D008540 7.2e-21 104.4 91 60.4
Duzib128G1950 Durio zibethinus HOM05D006702 ORTHO05D008540 7.2e-21 104.4 92 59.8
SGA_v2.0_scaffold224G42945 Striga asiatica HOM05D006702 ORTHO05D008540 7.2e-21 104.4 112 50.9
C03p01460 Brassica napus HOM05D006702 ORTHO05D008540 9.4e-21 104.0 108 54.6
Carub.0006s0219 Capsella rubella HOM05D006702 ORTHO05D008540 9.4e-21 104.0 108 56.5
DCAR_020817 Daucus carota HOM05D006702 ORTHO05D008540 9.4e-21 104.0 97 61.9
PSO339G3061 Papaver somniferum HOM05D006702 ORTHO05D008540 9.4e-21 104.0 137 48.2
Cpa.g.sc54.80 Carica papaya HOM05D006702 ORTHO05D008540 1.2e-20 103.6 102 56.9
CiPaw.10G130200 Carya illinoinensis HOM05D006702 ORTHO05D008540 1.2e-20 103.6 92 60.9
Phvul.007G219250 Phaseolus vulgaris HOM05D006702 ORTHO05D008540 1.2e-20 103.6 123 50.4
FvH4_6g16390 Fragaria vesca HOM05D006702 ORTHO05D008540 1.6e-20 103.2 116 51.7
FAN14G1896 Fragaria x ananassa HOM05D006702 ORTHO05D008540 1.6e-20 103.2 116 51.7
Oeu045060.1 Olea europaea HOM05D006702 ORTHO05D008540 1.6e-20 103.2 97 57.7
EL10Ac7g16628 Beta vulgaris HOM05D006702 ORTHO05D008540 2.1e-20 102.8 101 56.4
Lj5g0016847 Lotus japonicus HOM05D006702 ORTHO05D008540 2.1e-20 102.8 135 48.1
TAR369G0293 Trochodendron aralioides HOM05D006702 ORTHO05D008540 2.1e-20 102.8 91 61.5
BraA03t09496Z Brassica rapa HOM05D006702 ORTHO05D008540 2.7e-20 102.4 127 49.6
Sabra16G0098200 Salix brachista HOM05D006702 ORTHO05D008540 2.7e-20 102.4 93 61.3
Sp6g39370 Schrenkiella parvula HOM05D006702 ORTHO05D008540 2.7e-20 102.4 126 50.0
Lalb_Chr24g0398871 Lupinus albus HOM05D006702 ORTHO05D008540 3.6e-20 102.1 98 57.1
AL6G12700 Arabidopsis lyrata HOM05D006702 ORTHO05D008540 4.6e-20 101.7 124 51.6
Hma1.2p1_0205F.1_g087030 Hydrangea macrophylla HOM05D006702 ORTHO05D008540 4.6e-20 101.7 73 71.2
BcaB01g05844 Brassica carinata HOM05D006702 ORTHO05D008540 6.1e-20 101.3 108 53.7
CiPaw.10G130000 Carya illinoinensis HOM05D006702 ORTHO05D008540 6.1e-20 101.3 92 59.8
AT5G03370 Arabidopsis thaliana HOM05D006702 ORTHO05D008540 7.9e-20 100.9 120 50.0
BolC3t12702H Brassica oleracea HOM05D006702 ORTHO05D008540 7.9e-20 100.9 106 53.8
Lsat_1_v5_gn_6_25081 Lactuca sativa HOM05D006702 ORTHO05D008540 3.0e-19 99.0 101 54.5
Atru.chr8.1809 Acer truncatum HOM05D006702 ORTHO05D008540 3.9e-19 98.6 112 50.0
Nitab4.5_0008928g0020 Nicotiana tabacum HOM05D006702 ORTHO05D008540 3.9e-19 98.6 105 57.1
CARHR209960 Cardamine hirsuta HOM05D006702 ORTHO05D008540 5.1e-19 98.2 96 57.3
MSTRG.10321 Avicennia marina HOM05D006702 ORTHO05D008540 6.7e-19 97.8 97 52.6
Thhalv10003274m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 8.8e-19 97.4 87 59.8
A03p01140 Brassica napus HOM05D000070 ORTHO05D001255 1.1e-18 97.1 106 51.9
SEGI_37807 Sequoiadendron giganteum HOM05D006702 ORTHO05D008540 1.1e-18 97.1 95 55.8
Sc02g0001610 Simmondsia chinensis HOM05D006702 ORTHO05D008540 1.1e-18 97.1 93 57.0
AUR62042500 Chenopodium quinoa HOM05D006702 ORTHO05D008540 1.5e-18 96.7 91 60.4
Hund25533 Selenicereus undatus HOM05D006702 ORTHO05D008540 2.5e-18 95.9 78 64.1
Lj2P122T8 Lonicera japonica HOM05D006702 ORTHO05D008540 3.3e-18 95.5 91 58.2
Peaxi162Scf01139g00005 Petunia axillaris HOM05D006702 ORTHO05D008540 4.3e-18 95.1 89 58.4
arahy.Tifrunner.gnm1.ann1.C2LQEN Arachis hypogaea HOM05D006702 ORTHO05D008540 1.3e-17 93.6 84 59.5
arahy.Tifrunner.gnm1.ann1.NQ6TBI Arachis hypogaea HOM05D006702 ORTHO05D008540 1.3e-17 93.6 84 59.5
CiPaw.09G172500 Carya illinoinensis HOM05D006702 ORTHO05D008540 2.2e-17 92.8 112 50.0
DCAR_014995 Daucus carota HOM05D006702 ORTHO05D008540 2.2e-17 92.8 97 53.6
Pp3c18_4750 Physcomitrium patens HOM05D006702 ORTHO05D008540 2.2e-17 92.8 102 51.0
Thhalv10014711m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 3.7e-17 92.0 79 62.0
Mapoly0013s0202 Marchantia polymorpha HOM05D006702 ORTHO05D008540 4.8e-17 91.7 98 49.0
AagrBONN_evm.TU.Sc2ySwM_368.2290 Anthoceros agrestis HOM05D006702 ORTHO05D008540 8.2e-17 90.9 72 62.5
CAN.G900.33 Capsicum annuum HOM05D006702 ORTHO05D008540 8.2e-17 90.9 98 58.2
Thhalv10029095m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 1.1e-16 90.5 79 60.8
unitig_0.g683 Utricularia gibba HOM05D006702 ORTHO05D008540 5.3e-16 88.2 73 60.3
CARHR118060 Cardamine hirsuta HOM05D006702 ORTHO05D008540 9.1e-16 87.4 74 58.1
AagrBONN_evm.TU.Sc2ySwM_362.139 Anthoceros agrestis HOM05D006702 ORTHO05D008540 1.3e-14 83.6 105 47.6
SMO137G0384 Selaginella moellendorffii HOM05D006702 ORTHO05D008540 1.3e-14 83.6 90 52.2
Pp3c1_15300 Physcomitrium patens HOM05D006702 ORTHO05D008540 1.0e-11 73.9 99 43.4
Potri.006G124966 Populus trichocarpa HOM05D006702 ORTHO05D008540 9.7e-10 67.4 104 46.2
CDE05G1088 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 3.7e-09 65.5 40 77.5
Sabra06G0098700 Salix brachista HOM05D000002 ORTHO05D000047 1.0e-06 57.4 69 47.8
Pp3c5_16270 Physcomitrium patens HOM05D006702 ORTHO05D008540 3.8e-06 55.5 89 34.8
FAN02G1423 Fragaria x ananassa HOM05D006702 ORTHO05D008540 5.0e-06 55.1 54 51.9
FAN05G1090 Fragaria x ananassa HOM05D006702 ORTHO05D008540 5.0e-06 55.1 54 51.9


User provided reference genes

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