Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 0.0e+00 1989.5 1049 100.0
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1103.2 1044 57.5
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1087.4 1038 57.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1083.6 1044 56.6
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1083.6 1018 58.0
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 3.3e-307 1058.5 1018 56.9
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 2.1e-306 1055.8 1049 55.8
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 1.4e-305 1053.1 1057 56.2
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 5.3e-305 1051.2 1049 55.9
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 6.4e-303 1044.3 1043 54.0
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 3.2e-302 1042.0 1031 56.3
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 7.9e-301 1037.3 1036 56.0
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 3.0e-300 1035.4 1031 55.8
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 8.7e-300 1033.9 1154 52.1
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 9.6e-299 1030.4 1018 54.6
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 2.1e-298 1029.2 1013 56.3
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 1.1e-297 1026.9 1048 53.8
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 1.8e-297 1026.2 1047 53.7
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 6.9e-297 1024.2 1039 55.3
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 9.0e-297 1023.8 1051 53.7
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 9.0e-297 1023.8 1038 54.2
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 4.5e-296 1021.5 1023 54.5
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 5.8e-296 1021.1 1044 53.8
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 5.8e-296 1021.1 1055 53.5
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 3.8e-295 1018.5 1046 54.7
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 1.2e-293 1013.4 1050 53.4
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 2.7e-293 1012.3 1051 54.2
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 7.9e-293 1010.7 1048 53.9
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 2.3e-292 1009.2 1038 54.4
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.3e-292 1009.2 1043 54.5
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 3.9e-292 1008.4 990 54.9
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 8.7e-292 1007.3 1017 55.2
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 1.1e-291 1006.9 1048 52.9
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 7.4e-291 1004.2 1046 52.9
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 6.2e-290 1001.1 1021 54.1
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 1.4e-289 1000.0 958 57.3
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 1.8e-289 999.6 984 54.6
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 1.5e-288 996.5 1051 53.2
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 1.5e-288 996.5 1044 53.8
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 4.5e-288 995.0 973 54.2
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 1.0e-287 993.8 1026 53.0
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 3.8e-287 991.9 1012 54.5
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 4.9e-287 991.5 1026 52.6
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.9e-287 991.5 1018 54.6
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 6.5e-287 991.1 1009 54.2
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 1.1e-286 990.3 1012 54.3
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 2.5e-286 989.2 1014 53.9
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 3.2e-286 988.8 1043 54.2
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 9.3e-286 987.3 1063 52.5
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 1.6e-285 986.5 1034 54.1
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.0e-284 982.2 929 56.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 1.1e-283 980.3 1016 53.2
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 1.6e-282 976.5 1042 52.5
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 3.7e-282 975.3 1038 52.1
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 6.3e-282 974.5 1059 51.5
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 1.1e-281 973.8 1044 52.7
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 5.3e-281 971.5 1041 52.0
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 6.9e-281 971.1 1039 52.7
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.2e-280 970.3 1061 51.5
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 4.5e-280 968.4 1059 52.6
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 2.2e-279 966.1 1048 52.2
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 2.2e-279 966.1 1048 52.2
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 3.8e-279 965.3 1038 53.0
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 5.0e-279 964.9 1064 50.8
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 5.0e-279 964.9 1049 51.5
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 6.5e-279 964.5 1037 52.2
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 1.4e-278 963.4 1070 51.4
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.9e-278 963.0 1061 50.5
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 1.9e-278 963.0 1040 52.1
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 4.2e-278 961.8 1075 50.0
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 5.5e-278 961.4 1051 51.2
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 5.5e-278 961.4 1075 51.3
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 3.9e-276 955.3 1060 51.1
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 6.7e-276 954.5 1043 51.8
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.5e-275 953.4 1050 51.6
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 1.5e-275 953.4 1060 51.0
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 2.5e-275 952.6 1039 51.9
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 1.3e-274 950.3 1017 52.7
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 1.6e-274 949.9 1038 51.6
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 2.4e-273 946.0 1054 51.4
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 7.7e-272 941.0 1085 49.9
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 9.7e-267 924.1 1021 51.5
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.5e-264 916.8 1077 49.4
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.1e-262 910.6 1166 47.5
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 6.7e-260 901.4 830 56.1
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 3.5e-256 889.0 1045 49.6
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.7e-242 843.6 741 59.9
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 2.4e-241 839.7 746 58.0
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.0e-240 836.6 741 59.4
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 5.2e-236 822.0 917 49.4
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 6.8e-236 821.6 768 56.2
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 6.3e-234 815.1 743 56.3
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.5e-232 809.3 735 57.6
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 5.2e-220 768.8 1054 45.7
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 3.9e-199 699.5 606 61.2
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 6.6e-199 698.7 630 57.1
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.2e-197 694.5 1036 42.2
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 6.0e-192 675.6 546 63.9
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.1e-189 667.2 992 41.9
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 4.8e-189 666.0 1056 38.5
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 5.3e-180 636.0 560 57.3
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 2.7e-176 623.6 682 52.8
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.3e-175 620.5 721 50.5
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 9.0e-172 608.6 879 41.4
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 8.2e-157 558.9 910 37.5
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 9.4e-153 545.4 400 74.2
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.1e-148 530.4 990 36.8
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.8e-132 478.0 429 56.9
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.2e-128 465.3 679 44.2
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.2e-85 321.6 317 51.4
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-79 301.6 424 40.3
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.7e-75 288.1 248 61.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.5e-73 282.3 270 54.1
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.4e-68 265.8 1050 25.5
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.9e-68 265.4 799 31.3
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 2.5e-65 255.0 973 27.6
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 6.9e-63 246.9 238 55.9
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 9.9e-62 243.0 352 40.9
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 5.5e-60 237.3 223 53.8
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 7.9e-59 233.4 200 56.0
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 7.4e-57 226.9 235 54.9
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.8e-50 205.7 298 43.0
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 6.1e-43 180.6 282 45.7
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 8.5e-37 160.2 267 43.8
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 9.7e-33 146.7 138 57.2
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 2.0e-30 139.0 108 63.9
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 7.2e-20 104.0 63 76.2
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 1.8e-18 99.4 86 57.0
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 3.1e-15 88.6 315 27.3
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 8.5e-13 80.5 68 61.8
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.1e-12 80.1 68 61.8
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 7.2e-12 77.4 77 53.2
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-11 76.6 70 50.0
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.7e-11 75.5 57 61.4
Cre08.g362500 Chlamydomonas reinhardtii HOM05D005365 ORTHO05D006910 1.7e-08 66.2 415 22.9
SEGI_22187 Sequoiadendron giganteum HOM05D005365 ORTHO05D000227 3.1e-07 62.0 44 63.6
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.2e-06 60.1 52 61.5
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.6e-06 59.7 50 56.0


User provided reference genes

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