Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 9.1e-281 969.5 476 100.0
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 9.5e-153 544.3 469 57.6
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 1.2e-144 517.3 446 57.6
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 5.2e-143 511.9 446 55.4
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 6.8e-143 511.5 446 55.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 6.8e-143 511.5 446 56.1
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 1.5e-142 510.4 446 56.3
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 9.8e-142 507.7 447 58.2
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 1.3e-141 507.3 446 55.6
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 4.9e-141 505.4 446 55.4
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 4.1e-140 502.3 446 55.8
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 2.7e-139 499.6 446 55.4
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 3.5e-139 499.2 446 55.2
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 4.6e-139 498.8 447 55.3
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 6.0e-139 498.4 446 55.6
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 2.3e-138 496.5 444 57.0
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 8.6e-138 494.6 446 54.9
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 1.1e-137 494.2 446 53.8
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 2.5e-137 493.0 446 54.7
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 1.2e-136 490.7 446 53.8
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 4.7e-136 488.8 462 53.2
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 4.7e-136 488.8 446 54.0
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 1.1e-135 487.6 446 55.2
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 1.8e-135 486.9 446 54.5
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 3.1e-135 486.1 446 54.5
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 4.0e-135 485.7 446 53.4
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 6.8e-135 485.0 451 53.7
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 1.2e-134 484.2 446 53.6
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 1.2e-134 484.2 446 52.9
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 2.0e-134 483.4 446 54.9
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 2.0e-134 483.4 448 53.3
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 4.4e-134 482.3 462 52.4
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 4.4e-134 482.3 447 53.9
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 4.4e-134 482.3 445 54.2
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 5.8e-134 481.9 448 53.3
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 2.9e-133 479.6 482 50.4
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 6.4e-133 478.4 451 53.4
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 8.3e-133 478.0 446 52.7
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 1.4e-132 477.2 462 51.9
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 5.4e-132 475.3 451 53.0
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 5.4e-132 475.3 451 52.8
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 7.1e-132 474.9 446 53.4
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 7.1e-132 474.9 447 53.0
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.2e-131 474.2 447 53.2
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 2.1e-131 473.4 446 52.7
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 2.1e-131 473.4 462 51.5
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 2.7e-131 473.0 457 52.3
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 1.0e-130 471.1 469 50.5
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 1.3e-130 470.7 475 50.1
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 6.6e-130 468.4 440 53.6
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 1.1e-129 467.6 447 52.8
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 1.1e-129 467.6 441 52.8
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 1.9e-129 466.8 481 49.9
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 2.5e-129 466.5 446 53.4
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 2.5e-129 466.5 447 51.2
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 2.5e-129 466.5 446 51.6
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 3.3e-129 466.1 446 53.1
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 7.3e-129 464.9 458 52.8
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 7.3e-129 464.9 446 52.0
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 2.8e-128 463.0 496 49.6
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 2.8e-128 463.0 447 51.5
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 3.6e-128 462.6 447 52.6
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 8.1e-128 461.5 446 52.5
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 1.1e-127 461.1 446 52.2
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.8e-127 460.3 446 52.2
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 6.8e-127 458.4 449 51.9
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 1.2e-126 457.6 448 51.3
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 1.2e-126 457.6 448 51.3
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 1.2e-126 457.6 446 52.5
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 1.5e-126 457.2 447 52.1
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 4.4e-126 455.7 446 53.4
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 7.6e-126 454.9 447 50.1
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 7.6e-126 454.9 447 52.3
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 1.7e-125 453.8 447 52.6
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 8.4e-125 451.4 446 51.6
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 1.1e-124 451.1 448 50.0
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 5.4e-124 448.7 450 49.8
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 9.2e-124 448.0 449 50.8
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 2.3e-122 443.4 447 49.2
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 5.1e-122 442.2 489 47.0
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 8.6e-122 441.4 447 48.5
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 1.5e-121 440.7 489 47.9
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 4.3e-121 439.1 446 47.8
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 2.1e-120 436.8 472 47.9
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 2.8e-120 436.4 497 46.9
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 3.1e-119 433.0 449 50.3
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 2.0e-118 430.3 447 48.8
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 4.4e-118 429.1 446 48.9
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.1e-116 424.5 477 47.0
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 4.6e-115 419.1 430 48.8
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 5.6e-113 412.1 528 43.6
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 9.6e-113 411.4 369 53.9
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 4.0e-111 406.0 446 48.7
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 8.2e-96 355.1 296 58.1
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 2.9e-93 346.7 469 40.9
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 9.3e-92 341.7 469 40.7
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.3e-90 337.8 344 52.6
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 3.9e-90 336.3 344 49.4
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.1e-89 334.7 302 57.9
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 4.8e-88 329.3 340 50.3
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 4.5e-86 322.8 489 38.4
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 4.5e-86 322.8 466 38.0
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 3.1e-79 300.1 327 47.1
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.1e-71 275.0 306 49.7
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 3.2e-68 263.5 219 57.5
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 3.9e-66 256.5 214 62.1
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 2.2e-61 240.7 233 51.5
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 3.5e-38 163.7 98 72.4
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.7e-35 153.3 200 42.5
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 4.0e-34 150.2 189 44.4
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.4e-33 146.7 189 41.8
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 3.0e-21 107.5 208 34.1
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 2.5e-20 104.4 97 46.4
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 5.4e-15 86.7 54 66.7
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 3.0e-13 80.9 52 67.3
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 1.9e-12 78.2 52 59.6
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 8.9e-10 69.3 60 43.3
Mapoly0037s0107 Marchantia polymorpha HOM05D001597 ORTHO05D001512 7.6e-09 66.2 272 26.1
Pp3c7_8560 Physcomitrium patens HOM05D001597 ORTHO05D001512 7.6e-09 66.2 269 24.9
Pp3c12_280 Physcomitrium patens HOM05D000563 ORTHO05D000536 1.3e-08 65.5 206 28.6
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 2.2e-08 64.7 331 23.9
ECA236G1975 Erigeron canadensis HOM05D000563 ORTHO05D000536 6.4e-08 63.2 204 28.9
Migut.D00259 Erythranthe guttata HOM05D000563 ORTHO05D000536 8.4e-08 62.8 172 29.7
Nn2g11235 Nelumbo nucifera HOM05D000563 ORTHO05D000536 8.4e-08 62.8 178 28.7
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.1e-07 62.4 145 31.0
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 2.4e-07 61.2 149 31.5
Pp3c19_11580 Physcomitrium patens HOM05D001597 ORTHO05D001512 2.4e-07 61.2 250 27.2
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 2.4e-07 61.2 196 28.6
Rhsim13G0022300 Rhododendron simsii HOM05D000563 ORTHO05D000536 3.2e-07 60.8 243 27.2
PSO384G4100 Papaver somniferum HOM05D000563 ORTHO05D000536 4.1e-07 60.5 149 31.5
Pp3c11_24880 Physcomitrium patens HOM05D001597 ORTHO05D001512 5.4e-07 60.1 269 23.4
SMO364G0489 Selaginella moellendorffii HOM05D000563 ORTHO05D000536 7.1e-07 59.7 179 28.5
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 9.2e-07 59.3 54 50.0
Eucgr.K03404 Eucalyptus grandis HOM05D000563 ORTHO05D000536 9.2e-07 59.3 176 27.3
Lj1g0011876 Lotus japonicus HOM05D002203 ORTHO05D002647 9.2e-07 59.3 164 29.3
Pp3c12_870 Physcomitrium patens HOM05D000563 ORTHO05D000536 1.6e-06 58.5 215 27.0
Zm00001eb174850 Zea mays HOM05D000563 ORTHO05D000536 1.6e-06 58.5 132 28.0
TAR623G1349 Trochodendron aralioides HOM05D000563 ORTHO05D000536 3.5e-06 57.4 149 31.5
Nitab4.5_0006999g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 6.0e-06 56.6 131 30.5


User provided reference genes

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