Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 1.7e-70 269.2 139 100.0
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 2.3e-59 232.3 146 83.6
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 8.9e-51 203.8 144 73.6
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 7.5e-50 200.7 143 72.7
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 7.5e-50 200.7 144 73.6
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.7e-49 199.5 126 80.2
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.2e-49 199.1 143 72.7
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 4.9e-49 198.0 143 72.7
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 4.9e-49 198.0 140 74.3
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 6.4e-49 197.6 139 74.1
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.1e-48 196.8 143 71.3
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.4e-48 196.4 133 76.7
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 1.8e-48 196.1 138 74.6
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 2.4e-48 195.7 143 70.6
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.2e-48 195.3 143 72.0
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 4.1e-48 194.9 145 70.3
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 5.4e-48 194.5 141 72.3
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 7.0e-48 194.1 143 72.0
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 7.0e-48 194.1 143 71.3
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 7.0e-48 194.1 142 75.4
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 9.2e-48 193.7 141 73.0
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.2e-47 193.4 144 69.4
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.2e-47 193.4 148 69.6
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.2e-47 193.4 142 72.5
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.2e-47 193.4 135 74.8
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 1.2e-47 193.4 142 71.1
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.6e-47 193.0 142 73.2
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.6e-47 193.0 145 69.7
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.6e-47 193.0 145 69.7
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.6e-47 193.0 145 69.7
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 2.0e-47 192.6 139 71.9
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 2.7e-47 192.2 145 69.0
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.7e-47 192.2 142 73.2
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 4.6e-47 191.4 144 70.1
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.9e-47 191.0 126 77.8
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 5.9e-47 191.0 138 73.2
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 7.8e-47 190.7 143 71.3
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 7.8e-47 190.7 142 72.5
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 7.8e-47 190.7 143 70.6
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.0e-46 190.3 126 76.2
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.0e-46 190.3 144 68.8
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.0e-46 190.3 143 70.6
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.0e-46 190.3 145 70.3
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.0e-46 190.3 135 73.3
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.0e-46 190.3 146 67.8
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.3e-46 189.9 147 68.7
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.3e-46 189.9 147 68.7
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.3e-46 189.9 147 68.7
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.3e-46 189.9 137 73.0
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.3e-46 189.9 137 73.0
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.3e-46 189.9 138 71.7
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.3e-46 189.9 142 72.5
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.7e-46 189.5 139 71.2
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 2.3e-46 189.1 143 69.9
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.3e-46 189.1 141 70.9
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 3.0e-46 188.7 144 69.4
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 3.0e-46 188.7 133 72.9
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 3.0e-46 188.7 141 72.3
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 3.9e-46 188.3 145 72.4
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 3.9e-46 188.3 145 72.4
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 3.9e-46 188.3 147 70.1
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 3.9e-46 188.3 142 70.4
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.9e-46 188.3 138 71.0
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 3.9e-46 188.3 142 70.4
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.0e-46 188.0 142 69.7
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 6.6e-46 187.6 144 68.1
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 6.6e-46 187.6 143 69.2
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 6.6e-46 187.6 143 69.2
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 6.6e-46 187.6 143 69.2
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 8.6e-46 187.2 141 72.3
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 8.6e-46 187.2 114 82.5
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 8.6e-46 187.2 143 71.3
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.1e-45 186.8 126 77.0
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 1.1e-45 186.8 141 70.9
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.1e-45 186.8 139 71.2
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 1.5e-45 186.4 148 68.9
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.5e-45 185.7 143 67.8
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.5e-45 185.7 142 72.5
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 2.5e-45 185.7 142 68.3
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 4.3e-45 184.9 151 65.6
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 4.3e-45 184.9 139 70.5
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 5.6e-45 184.5 140 69.3
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 9.5e-45 183.7 126 75.4
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.2e-44 183.3 139 68.3
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.2e-44 183.3 147 66.7
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 1.6e-44 183.0 140 70.0
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.6e-44 183.0 111 82.0
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 2.1e-44 182.6 118 78.8
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.8e-44 182.2 145 66.2
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.8e-44 182.2 144 67.4
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 2.8e-44 182.2 152 64.5
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 3.6e-44 181.8 145 66.2
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.6e-44 181.8 142 67.6
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 3.6e-44 181.8 139 69.8
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 3.6e-44 181.8 143 67.8
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 4.7e-44 181.4 143 68.5
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 4.7e-44 181.4 143 67.1
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 4.7e-44 181.4 142 69.7
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 8.0e-44 180.6 114 78.9
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 8.0e-44 180.6 114 78.9
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.4e-43 179.9 143 66.4
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.8e-43 179.5 144 66.7
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 2.3e-43 179.1 134 69.4
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.3e-43 179.1 141 66.7
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.3e-43 179.1 141 66.7
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.1e-43 178.7 114 78.1
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 4.0e-43 178.3 144 66.0
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 4.0e-43 178.3 133 70.7
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 6.8e-43 177.6 168 61.9
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 8.9e-43 177.2 163 61.3
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.2e-42 176.8 116 76.7
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 1.2e-42 176.8 138 68.1
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 1.2e-42 176.8 139 67.6
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 2.6e-42 175.6 139 68.3
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 3.4e-42 175.3 144 66.7
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.3e-41 173.3 132 69.7
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.2e-41 172.6 144 63.9
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 9.2e-40 167.2 117 71.8
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.2e-39 166.8 208 49.5
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 6.0e-39 164.5 110 74.5
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 1.9e-37 159.5 88 88.6
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 3.3e-37 158.7 89 87.6
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.3e-37 158.7 172 54.1
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 9.5e-37 157.1 88 86.4
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 9.5e-37 157.1 90 83.3
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 3.6e-36 155.2 170 52.9
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 4.6e-31 138.3 104 70.2
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 7.8e-31 137.5 109 65.1
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 8.6e-30 134.0 112 64.3
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.3e-27 125.9 121 54.5
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.5e-26 123.2 113 59.3
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 5.8e-26 121.3 109 58.7
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.2e-24 115.5 113 59.3
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 4.1e-24 115.2 131 54.2
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 4.6e-23 111.7 97 59.8
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 1.5e-21 106.7 63 82.5
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 2.1e-20 102.8 86 57.0
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.4e-19 100.1 60 80.0
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 6.8e-19 97.8 89 59.6
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 2.2e-17 92.8 74 63.5
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.3e-14 83.6 89 49.4
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 5.1e-14 81.6 142 40.1
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 9.6e-13 77.4 89 49.4
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.1e-11 72.4 63 57.1
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 1.5e-10 70.1 48 72.9
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 3.2e-08 62.4 35 82.9
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 2.1e-07 59.7 99 43.4
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 4.6e-07 58.5 43 69.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 4.6e-07 58.5 43 69.8
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 2.3e-06 56.2 97 34.0


User provided reference genes

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