Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 4.3e-204 714.5 383 100.0
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 1.1e-148 530.4 386 76.9
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 2.4e-42 177.2 441 35.4
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 3.2e-42 176.8 376 36.2
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 2.5e-39 167.2 453 33.8
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 8.1e-38 162.2 470 33.6
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 1.8e-37 161.0 448 33.9
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.1e-37 160.2 446 34.1
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 5.3e-37 159.5 441 33.6
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 6.9e-37 159.1 447 33.1
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 2.6e-36 157.1 447 32.9
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 3.4e-36 156.8 458 30.3
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.4e-36 156.8 436 33.5
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 4.5e-36 156.4 447 32.4
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 5.8e-36 156.0 428 33.2
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 7.6e-36 155.6 455 32.3
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 7.6e-36 155.6 448 33.0
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.7e-35 154.5 437 32.3
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.7e-35 154.5 437 32.3
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.7e-35 154.5 437 32.3
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 1.7e-35 154.5 443 32.3
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.2e-35 154.1 448 33.0
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 2.9e-35 153.7 430 32.8
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 3.8e-35 153.3 450 31.1
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 3.8e-35 153.3 456 32.2
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 3.8e-35 153.3 461 32.3
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 8.4e-35 152.1 445 33.5
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 1.9e-34 151.0 451 31.7
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 3.2e-34 150.2 435 31.5
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 4.2e-34 149.8 459 30.5
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 5.5e-34 149.4 451 33.5
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 7.1e-34 149.1 436 31.7
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 7.1e-34 149.1 424 32.8
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 1.2e-33 148.3 456 30.5
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.6e-33 147.9 395 34.4
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 1.6e-33 147.9 459 30.9
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 2.1e-33 147.5 455 32.5
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.1e-33 147.5 388 34.5
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 2.7e-33 147.1 452 32.3
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 4.6e-33 146.4 451 32.8
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 6.0e-33 146.0 453 30.7
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 7.9e-33 145.6 395 34.2
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 7.9e-33 145.6 453 32.5
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 7.9e-33 145.6 448 30.8
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 1.3e-32 144.8 451 32.6
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 1.8e-32 144.4 457 31.7
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 2.3e-32 144.1 458 31.2
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 3.0e-32 143.7 440 31.4
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 3.9e-32 143.3 448 31.9
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 3.9e-32 143.3 447 32.0
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 6.7e-32 142.5 444 33.1
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 1.9e-31 141.0 391 33.8
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 4.3e-31 139.8 446 30.0
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 4.3e-31 139.8 404 32.4
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 5.7e-31 139.4 464 30.8
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 7.4e-31 139.0 454 30.2
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 9.6e-31 138.7 443 31.2
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 1.3e-30 138.3 395 32.9
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 2.8e-30 137.1 414 32.9
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 6.3e-30 136.0 452 30.3
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 8.2e-30 135.6 461 31.2
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 8.2e-30 135.6 452 29.4
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 1.4e-29 134.8 240 38.8
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.8e-29 134.4 439 30.5
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.8e-29 134.4 228 38.6
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 2.4e-29 134.0 450 30.7
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 4.1e-29 133.3 451 31.5
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 9.0e-29 132.1 437 30.4
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 1.2e-28 131.7 431 30.2
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.5e-28 131.3 445 29.9
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 4.5e-28 129.8 450 29.8
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 4.5e-28 129.8 445 28.5
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 1.0e-27 128.6 444 29.5
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 1.3e-27 128.3 448 29.0
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 2.2e-27 127.5 227 37.0
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 2.2e-27 127.5 450 29.6
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 8.5e-27 125.6 443 29.1
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 1.1e-26 125.2 444 30.2
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 2.5e-26 124.0 460 29.6
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 3.2e-26 123.6 377 31.6
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 5.5e-26 122.9 405 30.6
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 5.5e-26 122.9 456 30.9
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 5.5e-26 122.9 245 34.7
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 2.7e-25 120.6 127 51.2
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 6.1e-25 119.4 424 29.7
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.3e-22 111.7 441 29.0
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 1.5e-20 104.8 397 29.5
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 7.7e-20 102.4 453 26.9
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 8.5e-19 99.0 447 27.7
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 1.4e-18 98.2 131 43.5
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 7.9e-17 92.4 409 30.8
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.9e-16 90.1 290 31.0
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 7.4e-15 85.9 403 28.5
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 4.8e-14 83.2 60 60.0
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.2e-12 78.6 326 30.7
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.7e-11 74.7 344 27.0
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.0e-11 73.2 389 27.5
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.6e-09 68.2 121 34.7
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 6.1e-09 66.2 129 32.6
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 3.9e-08 63.5 499 23.2
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 5.2e-08 63.2 264 31.8
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.5e-07 61.6 242 28.1
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 4.8e-06 56.6 69 40.6
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 8.2e-06 55.8 292 23.3


User provided reference genes

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