Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb377990 Zea mays HOM05D003075 ORTHO05D003430 4.1e-118 428.3 256 100.0
Os06g0134050 Oryza sativa ssp. japonica HOM05D003075 ORTHO05D003430 3.1e-41 172.9 92 92.4
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.2e-37 161.0 92 84.8
Atru.chr5.294 Acer truncatum HOM05D003075 ORTHO05D003430 1.0e-36 157.9 91 83.5
arahy.Tifrunner.gnm1.ann1.G5NZ7A Arachis hypogaea HOM05D003075 ORTHO05D003430 3.0e-36 156.4 91 79.1
RcHm_v2.0_Chr1g0350011 Rosa chinensis HOM05D003075 ORTHO05D003430 3.9e-36 156.0 92 80.4
GSVIVG01027678001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.9e-36 156.0 92 79.3
BcaC02g12230 Brassica carinata HOM05D003075 ORTHO05D003430 5.1e-36 155.6 94 80.9
C04p06190 Brassica napus HOM05D003075 ORTHO05D003430 5.1e-36 155.6 94 80.9
Eucgr.D02463 Eucalyptus grandis HOM05D003075 ORTHO05D003430 8.7e-36 154.8 94 80.9
THA.LOC104819580 Tarenaya hassleriana HOM05D003075 ORTHO05D003430 8.7e-36 154.8 91 84.6
GSVIVG01027679001 Vitis vinifera HOM05D003075 ORTHO05D003430 1.1e-35 154.5 90 80.0
arahy.Tifrunner.gnm1.ann1.7U8F1S Arachis hypogaea HOM05D003075 ORTHO05D003430 1.5e-35 154.1 91 76.9
MSTRG.4898 Avicennia marina HOM05D003075 ORTHO05D003430 1.5e-35 154.1 94 75.5
CSS0007073 Camellia sinensis var. sinensis HOM05D003075 ORTHO05D003430 1.9e-35 153.7 93 77.4
Cfa001744 Carpinus fangiana HOM05D003075 ORTHO05D003430 1.9e-35 153.7 89 82.0
FAN06G2161 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.5e-35 153.3 90 81.1
FAN10G0718 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.5e-35 153.3 90 81.1
FAN10G3608 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.5e-35 153.3 90 81.1
Gohir.D08G156200 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.5e-35 153.3 94 77.7
Lsat_1_v5_gn_7_9801 Lactuca sativa HOM05D003075 ORTHO05D003430 2.5e-35 153.3 90 80.0
Haze_16798 Corylus avellana HOM05D003075 ORTHO05D003430 3.3e-35 152.9 90 78.9
PGR042G3567 Punica granatum HOM05D003075 ORTHO05D003430 3.3e-35 152.9 93 79.6
Duzib138G0067 Durio zibethinus HOM05D003075 ORTHO05D003430 4.3e-35 152.5 91 80.2
Thecc.01G378100 Theobroma cacao HOM05D003075 ORTHO05D003430 4.3e-35 152.5 94 77.7
MELO3C006196.2 Cucumis melo HOM05D003075 ORTHO05D003430 5.6e-35 152.1 89 80.9
Migut.N01626 Erythranthe guttata HOM05D003075 ORTHO05D003430 5.6e-35 152.1 90 78.9
Gohir.A08G135300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 7.4e-35 151.8 89 80.9
Gorai.004G162500 Gossypium raimondii HOM05D003075 ORTHO05D003430 7.4e-35 151.8 89 80.9
Manes.01G266500 Manihot esculenta HOM05D003075 ORTHO05D003430 7.4e-35 151.8 93 77.4
Nitab4.5_0000457g0150 Nicotiana tabacum HOM05D003075 ORTHO05D003430 7.4e-35 151.8 90 80.0
Oeu064471.1 Olea europaea HOM05D003075 ORTHO05D003430 7.4e-35 151.8 90 80.0
CsaV3_3G009750 Cucumis sativus L. HOM05D003075 ORTHO05D003430 9.6e-35 151.4 89 80.9
Duzib138G1594 Durio zibethinus HOM05D003075 ORTHO05D003430 9.6e-35 151.4 91 80.2
QL08p052672 Quercus lobata HOM05D003075 ORTHO05D003430 9.6e-35 151.4 89 79.8
Ciclev10009039m.g Citrus clementina HOM05D003075 ORTHO05D003430 1.3e-34 151.0 96 77.1
FAN06G4578 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.3e-34 151.0 90 80.0
Nitab4.5_0004552g0030 Nicotiana tabacum HOM05D003075 ORTHO05D003430 1.3e-34 151.0 90 78.9
FvH4_7g11590 Fragaria vesca HOM05D003075 ORTHO05D003430 1.6e-34 150.6 87 82.8
FAN03G3200 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.6e-34 150.6 90 80.0
Prupe.2G143900 Prunus persica HOM05D003075 ORTHO05D003430 1.6e-34 150.6 87 82.8
TAR375G0194 Trochodendron aralioides HOM05D003075 ORTHO05D003430 1.6e-34 150.6 93 76.3
VMungo0331G0754 Vigna mungo HOM05D003075 ORTHO05D003430 1.6e-34 150.6 89 79.8
Cpa.g.sc11.49 Carica papaya HOM05D003075 ORTHO05D003430 2.1e-34 150.2 88 80.7
Psat7g231560 Pisum sativum HOM05D003075 ORTHO05D003430 2.1e-34 150.2 89 80.9
BolC4t22244H Brassica oleracea HOM05D003075 ORTHO05D003430 2.8e-34 149.8 90 83.3
MD00G1100000 Malus domestica HOM05D003075 ORTHO05D003430 2.8e-34 149.8 90 77.8
Phvul.010G084500 Phaseolus vulgaris HOM05D003075 ORTHO05D003430 2.8e-34 149.8 89 79.8
SGA_v2.0_scaffold43G16486 Striga asiatica HOM05D003075 ORTHO05D003430 2.8e-34 149.8 90 76.7
Carub.0004s2796 Capsella rubella HOM05D003075 ORTHO05D003430 3.7e-34 149.4 93 79.6
Glyma.17G254400 Glycine max HOM05D003075 ORTHO05D003430 3.7e-34 149.4 88 80.7
HanXRQChr04g0122761 Helianthus annuus HOM05D003075 ORTHO05D003430 3.7e-34 149.4 90 78.9
MBI12_g31643_MAGBIO Magnolia biondii HOM05D003075 ORTHO05D003430 3.7e-34 149.4 90 78.9
Medtr4g023500 Medicago truncatula HOM05D003075 ORTHO05D003430 3.7e-34 149.4 89 78.7
Nn1g01143 Nelumbo nucifera HOM05D003075 ORTHO05D003430 3.7e-34 149.4 88 78.4
Sopen01g036960 Solanum pennellii HOM05D003075 ORTHO05D003430 3.7e-34 149.4 88 80.7
PGSC0003DMG402025960 Solanum tuberosum HOM05D003075 ORTHO05D003430 3.7e-34 149.4 88 80.7
TPR.G9841 Trifolium pratense HOM05D003075 ORTHO05D003430 3.7e-34 149.4 89 77.5
AT2G45330 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 4.8e-34 149.1 94 76.6
Oeu003479.1 Olea europaea HOM05D003075 ORTHO05D003430 4.8e-34 149.1 97 74.2
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 6.2e-34 148.7 90 78.9
Gorai.009G455600 Gossypium raimondii HOM05D003075 ORTHO05D003430 8.1e-34 148.3 94 77.7
Lj3g0026412 Lotus japonicus HOM05D003075 ORTHO05D003430 8.1e-34 148.3 89 77.5
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 8.1e-34 148.3 93 77.4
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.1e-33 147.9 95 72.6
CAN.G388.29 Capsicum annuum HOM05D003075 ORTHO05D003430 1.4e-33 147.5 90 77.8
Gorai.008G298600 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.4e-33 147.5 95 76.8
Ca_17564_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 1.8e-33 147.1 89 77.5
ECA236G1357 Erigeron canadensis HOM05D003075 ORTHO05D003430 1.8e-33 147.1 90 77.8
Gohir.D05G389001 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.8e-33 147.1 94 76.6
Sabra02G0114300 Salix brachista HOM05D003075 ORTHO05D003430 1.8e-33 147.1 88 79.5
Solyc01g091210.3 Solanum lycopersicum HOM05D003075 ORTHO05D003430 1.8e-33 147.1 87 80.5
TWI23G0023 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 1.8e-33 147.1 90 75.6
AL4G44430 Arabidopsis lyrata HOM05D003075 ORTHO05D003430 2.4e-33 146.7 91 76.9
Cc02_g24000 Coffea canephora HOM05D003075 ORTHO05D003430 2.4e-33 146.7 89 79.8
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 4.0e-33 146.0 89 80.9
BraA05t19501Z Brassica rapa HOM05D003075 ORTHO05D003430 4.0e-33 146.0 89 80.9
Lj9A568T64 Lonicera japonica HOM05D003075 ORTHO05D003430 4.0e-33 146.0 89 76.4
SalBow5G2038 Salvia bowleyana HOM05D003075 ORTHO05D003430 4.0e-33 146.0 92 73.9
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 5.3e-33 145.6 88 77.3
A05p05260 Brassica napus HOM05D003075 ORTHO05D003430 5.3e-33 145.6 90 81.1
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 5.3e-33 145.6 90 78.9
BraA05t19496Z Brassica rapa HOM05D003075 ORTHO05D003430 5.3e-33 145.6 90 81.1
PSO478G3315 Papaver somniferum HOM05D003075 ORTHO05D003430 5.3e-33 145.6 90 76.7
Sc23g0003640 Simmondsia chinensis HOM05D003075 ORTHO05D003430 5.3e-33 145.6 92 79.3
Gorai.007G000400 Gossypium raimondii HOM05D003075 ORTHO05D003430 9.0e-33 144.8 88 78.4
BcaC02g12227 Brassica carinata HOM05D003075 ORTHO05D003430 1.2e-32 144.4 89 79.8
Lalb_Chr12g0208211 Lupinus albus HOM05D003075 ORTHO05D003430 1.2e-32 144.4 91 71.4
MD07G1120400 Malus domestica HOM05D003075 ORTHO05D003430 1.5e-32 144.1 89 75.3
CiPaw.09G176300 Carya illinoinensis HOM05D003075 ORTHO05D003430 2.0e-32 143.7 89 75.3
Hund17026 Selenicereus undatus HOM05D003075 ORTHO05D003430 2.0e-32 143.7 89 79.8
BcaB02g08941 Brassica carinata HOM05D003075 ORTHO05D003430 2.6e-32 143.3 90 81.1
CANSAT35G1223 Cannabis sativa HOM05D003075 ORTHO05D003430 2.6e-32 143.3 89 73.0
Medtr4g084670 Medicago truncatula HOM05D003075 ORTHO05D003430 2.6e-32 143.3 91 73.6
Glyma.17G199600 Glycine max HOM05D003075 ORTHO05D003430 3.4e-32 142.9 97 73.2
HPP92_008230 Vanilla planifolia HOM05D003075 ORTHO05D003430 3.4e-32 142.9 90 76.7
Ca_19890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 4.5e-32 142.5 89 76.4
Lj7C530G5 Lonicera japonica HOM05D003075 ORTHO05D003430 4.5e-32 142.5 94 73.4
ATR0733G147 Amborella trichopoda HOM05D003075 ORTHO05D003430 5.8e-32 142.1 99 71.7
Aqoxy5G02670 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 7.6e-32 141.7 99 68.7
Sp4g27360 Schrenkiella parvula HOM05D003075 ORTHO05D003430 7.6e-32 141.7 88 78.4
Aqoxy7G00659 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 9.9e-32 141.4 97 70.1
CDE09G0478 Ceratophyllum demersum HOM05D003075 ORTHO05D003430 9.9e-32 141.4 93 72.0
Gorai.002G268800 Gossypium raimondii HOM05D003075 ORTHO05D003430 9.9e-32 141.4 97 73.2
TWI14G0663 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 9.9e-32 141.4 89 73.0
AT5G23600 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 1.7e-31 140.6 89 75.3
Thhalv10001570m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 1.7e-31 140.6 89 76.4
Zm00001eb244410 Zea mays HOM05D003075 ORTHO05D003430 1.7e-31 140.6 73 95.9
Gohir.D01G222050 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.2e-31 140.2 93 73.1
Thhalv10019720m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 2.9e-31 139.8 89 76.4
SGA_v2.0_scaffold11G05572 Striga asiatica HOM05D003075 ORTHO05D003430 3.8e-31 139.4 91 72.5
vmacro13410 Vaccinium macrocarpon HOM05D003075 ORTHO05D003430 4.9e-31 139.0 91 71.4
Lsat_1_v5_gn_8_86100 Lactuca sativa HOM05D003075 ORTHO05D003430 6.4e-31 138.7 90 72.2
Potri.013G094500 Populus trichocarpa HOM05D003075 ORTHO05D003430 6.4e-31 138.7 88 73.9
Aa31LG1G26840 Aethionema arabicum HOM05D003075 ORTHO05D003430 8.4e-31 138.3 91 71.4
SalBow7G2967 Salvia bowleyana HOM05D003075 ORTHO05D003430 1.4e-30 137.5 90 71.1
AUR62013643 Chenopodium quinoa HOM05D003075 ORTHO05D003430 3.2e-30 136.3 89 74.2
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.5e-30 135.6 87 73.6
Potri.002G117000 Populus trichocarpa HOM05D003075 ORTHO05D003430 5.5e-30 135.6 88 72.7
AUR62018381 Chenopodium quinoa HOM05D003075 ORTHO05D003430 9.3e-30 134.8 89 73.0
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 9.3e-30 134.8 89 74.2
arahy.Tifrunner.gnm1.ann1.TA4JIU Arachis hypogaea HOM05D003075 ORTHO05D003430 1.2e-29 134.4 79 75.9
Rhsim07G0028400 Rhododendron simsii HOM05D003075 ORTHO05D003430 1.6e-29 134.0 125 55.2
Peaxi162Scf00013g03226 Petunia axillaris HOM05D003075 ORTHO05D003430 2.1e-29 133.7 80 77.5
arahy.Tifrunner.gnm1.ann1.1FZS4Y Arachis hypogaea HOM05D003075 ORTHO05D003430 6.0e-29 132.1 79 74.7
PSO135G0225 Papaver somniferum HOM05D003075 ORTHO05D003430 6.0e-29 132.1 88 72.7
arahy.Tifrunner.gnm1.ann1.2E18SB Arachis hypogaea HOM05D003075 ORTHO05D003430 7.9e-29 131.7 80 71.2
AUR62004205 Chenopodium quinoa HOM05D003075 ORTHO05D003430 7.9e-29 131.7 89 70.8
EL10Ac1g00881 Beta vulgaris HOM05D003075 ORTHO05D003430 1.8e-28 130.6 89 73.0
arahy.Tifrunner.gnm1.ann1.LQNG80 Arachis hypogaea HOM05D003075 ORTHO05D003430 5.1e-28 129.0 91 68.1
FAN01G2913 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-27 126.3 89 70.8
DCAR_008556 Daucus carota HOM05D003075 ORTHO05D003430 2.8e-26 123.2 94 61.7
Aqoxy5G02557 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 1.4e-25 120.9 87 65.5
RcHm_v2.0_Chr7g0199321 Rosa chinensis HOM05D003075 ORTHO05D003430 4.0e-25 119.4 79 70.9
SEGI_11423 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 2.0e-24 117.1 94 59.6
CARHR140540 Cardamine hirsuta HOM05D003075 ORTHO05D003430 4.5e-24 115.9 73 76.7
Hma1.2p1_0446F.1_g154650 Hydrangea macrophylla HOM05D003075 ORTHO05D003430 1.0e-23 114.8 78 69.2
SEGI_02177 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 1.7e-23 114.0 94 59.6
SMO364G0829 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 2.9e-23 113.2 95 56.8
Mapoly0104s0031 Marchantia polymorpha HOM05D003075 ORTHO05D003430 3.8e-23 112.8 93 57.0
SEGI_08717 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 6.5e-23 112.1 94 58.5
SEGI_22200 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 6.5e-23 112.1 99 58.6
SEGI_27896 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 6.5e-23 112.1 94 58.5
SEGI_27190 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 8.4e-23 111.7 100 57.0
SMO347G0280 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 1.1e-22 111.3 92 57.6
CBR_g28889 Chara braunii HOM05D003075 ORTHO05D003430 4.2e-22 109.4 89 62.9
Pp3c9_2940 Physcomitrium patens HOM05D003075 ORTHO05D003430 2.1e-21 107.1 92 54.3
PSO384G4045 Papaver somniferum HOM05D003075 ORTHO05D003430 6.0e-21 105.5 64 76.6
Sed0011315 Sechium edule HOM05D003075 ORTHO05D003430 7.9e-21 105.1 67 73.1
AagrBONN_evm.TU.Sc2ySwM_344.2903 Anthoceros agrestis HOM05D003075 ORTHO05D003430 3.9e-20 102.8 87 56.3
SMO364G0475 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 8.7e-20 101.7 90 51.1
Dinv43697 Davidia involucrata HOM05D003075 ORTHO05D003430 1.1e-19 101.3 65 70.8
Nitab4.5_0005272g0010 Nicotiana tabacum HOM05D003075 ORTHO05D003430 1.1e-19 101.3 90 61.1
Sp4g05260 Schrenkiella parvula HOM05D003075 ORTHO05D003430 1.5e-19 100.9 89 59.6
AUR62014192 Chenopodium quinoa HOM05D003075 ORTHO05D003430 1.3e-18 97.8 64 68.8
Ca_19902_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 1.6e-18 97.4 61 72.1
Nn4g26370 Nelumbo nucifera HOM05D003075 ORTHO05D003430 1.6e-18 97.4 80 56.2
AUR62043207 Chenopodium quinoa HOM05D003075 ORTHO05D003430 4.1e-17 92.8 131 45.0
Ca_29890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 4.1e-17 92.8 59 72.9
AL1G18190 Arabidopsis lyrata HOM05D003075 ORTHO05D003430 3.8e-15 86.3 63 68.3
FAN03G0642 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.2e-14 82.8 47 80.9
FAN03G2732 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.2e-14 82.8 70 61.4
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 7.9e-13 78.6 46 87.0
SMO199G0023 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 7.9e-13 78.6 87 46.0
SMO201G0115 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 2.5e-11 73.6 87 42.5
SMO147G0017 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 2.2e-10 70.5 77 45.5
Ah.05g174300 Amaranthus hybridus HOM05D003075 ORTHO05D003430 4.1e-09 66.2 48 60.4
C04p06260 Brassica napus HOM05D003075 ORTHO05D003430 1.2e-08 64.7 50 62.0
SMO361G0010 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 3.4e-08 63.2 80 41.2
A05p05290 Brassica napus HOM05D003075 ORTHO05D003430 1.7e-07 60.8 31 90.3
BraA05t19498Z Brassica rapa HOM05D003075 ORTHO05D003430 1.7e-07 60.8 31 90.3
C04p06230 Brassica napus HOM05D003075 ORTHO05D003430 2.2e-07 60.5 31 87.1
BraA05t19503Z Brassica rapa HOM05D003566 ORTHO05D005288 2.2e-07 60.5 65 52.3
SMO266G0030 Selaginella moellendorffii HOM05D001132 ORTHO05D374439 2.2e-07 60.5 83 41.0
arahy.Tifrunner.gnm1.ann1.GDF4RG Arachis hypogaea HOM05D003075 ORTHO05D003430 8.5e-07 58.5 30 86.7
Gorai.007G184200 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.4e-06 57.8 29 93.1
Gohir.A05G324955 Gossypium hirsutum HOM05D003075 ORTHO05D003430 4.2e-06 56.2 29 89.7
Gohir.A09G112250 Gossypium hirsutum HOM05D003075 ORTHO05D003430 5.5e-06 55.8 28 92.9
Gorai.001G000300 Gossypium raimondii HOM05D003075 ORTHO05D003430 5.5e-06 55.8 32 81.2
SMO364G0278 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 5.5e-06 55.8 71 39.4


User provided reference genes

Program Settings