Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 6.2e-293 1010.0 485 100.0
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 2.1e-168 596.3 481 61.3
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.0e-166 589.7 459 62.3
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 5.8e-166 588.2 468 61.5
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 2.9e-165 585.9 454 62.6
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.4e-164 582.8 454 62.6
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 4.2e-164 582.0 392 67.9
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.1e-163 579.7 471 59.9
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 3.5e-163 578.9 469 60.6
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 6.0e-163 578.2 449 62.4
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.1e-161 573.9 474 58.6
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.5e-161 573.5 466 59.4
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.9e-161 573.2 476 60.9
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 9.6e-161 570.9 463 59.8
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.3e-160 570.5 466 57.7
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 6.2e-160 568.2 466 58.8
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 2.4e-159 566.2 465 60.2
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 3.1e-159 565.8 465 58.9
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 5.3e-159 565.1 467 58.9
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 5.3e-159 565.1 461 59.7
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.2e-158 563.9 456 61.4
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.5e-158 563.5 468 59.6
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.5e-158 563.5 388 67.5
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 2.0e-158 563.1 491 57.2
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.0e-158 563.1 450 59.6
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 4.5e-158 562.0 463 59.4
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 4.5e-158 562.0 459 59.5
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 4.5e-158 562.0 482 58.3
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 7.6e-158 561.2 481 58.4
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.3e-157 560.5 518 55.6
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 1.7e-157 560.1 464 57.8
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 2.2e-157 559.7 481 56.3
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 2.9e-157 559.3 467 58.7
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 8.4e-157 557.8 459 59.3
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 1.1e-156 557.4 450 60.4
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 1.1e-156 557.4 484 56.6
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 1.4e-156 557.0 416 63.2
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.9e-156 556.6 471 57.5
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.9e-156 556.6 471 56.7
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 2.5e-156 556.2 469 57.8
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 9.3e-156 554.3 467 57.0
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 9.3e-156 554.3 459 59.0
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.2e-155 553.9 463 58.5
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 2.7e-155 552.7 463 58.3
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.5e-155 552.4 469 56.9
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 3.5e-155 552.4 469 58.0
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 7.9e-155 551.2 462 57.6
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.3e-154 550.4 463 57.7
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 2.3e-154 549.7 461 57.7
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 3.0e-154 549.3 460 57.8
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 5.1e-154 548.5 469 57.4
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 5.1e-154 548.5 459 57.1
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.1e-153 547.4 469 57.1
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.9e-153 546.6 473 56.7
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.9e-153 546.6 449 57.5
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.9e-153 546.6 459 56.9
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.5e-153 546.2 445 59.8
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 2.5e-153 546.2 457 57.1
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 5.7e-153 545.0 449 59.5
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.3e-152 543.9 470 56.6
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 3.7e-152 542.3 458 57.6
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.8e-151 540.0 469 55.7
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 3.1e-151 539.3 458 57.6
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 5.3e-151 538.5 466 56.9
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 9.0e-151 537.7 466 55.6
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.0e-150 536.6 484 55.8
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 2.6e-150 536.2 463 56.8
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 5.9e-150 535.0 471 55.6
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 5.0e-149 531.9 474 55.9
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.4e-148 530.4 448 57.1
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 3.2e-148 529.3 426 60.1
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 7.2e-148 528.1 542 51.3
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 8.7e-146 521.2 381 63.0
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.1e-145 520.8 459 55.6
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 1.3e-144 517.3 439 57.4
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 2.2e-144 516.5 460 57.2
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.5e-142 510.4 464 53.9
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 3.4e-142 509.2 418 57.9
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.8e-141 505.8 469 53.9
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 6.5e-141 505.0 487 53.2
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 3.2e-140 502.7 439 56.5
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 3.2e-140 502.7 381 63.0
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.0e-138 497.7 421 57.0
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.5e-137 493.8 459 54.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 3.3e-137 492.7 416 57.0
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.4e-130 470.7 487 50.5
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.0e-130 469.5 316 68.0
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.6e-129 466.5 339 63.7
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.2e-128 463.4 446 52.5
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 8.2e-128 461.5 459 52.5
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 4.5e-126 455.7 390 56.7
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 3.8e-125 452.6 407 53.6
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.2e-123 447.6 502 49.2
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 9.7e-121 438.0 428 51.6
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 1.7e-120 437.2 407 52.1
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.3e-117 427.6 356 59.8
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 1.7e-117 427.2 387 50.9
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.6e-115 420.6 360 53.6
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.8e-111 407.1 342 58.2
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.9e-108 397.1 407 52.3
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.9e-100 370.5 298 61.1
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 9.8e-89 331.6 361 48.5
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 8.3e-88 328.6 387 43.4
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.4e-87 325.9 389 44.0
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.4e-79 301.2 224 65.2
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 5.4e-79 299.3 204 68.1
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 7.1e-79 298.9 224 64.7
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 3.9e-77 293.1 314 48.1
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 2.0e-73 280.8 212 62.3
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 5.8e-73 279.3 139 93.5
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 7.6e-73 278.9 212 61.8
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 1.2e-70 271.6 254 52.4
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 1.2e-70 271.6 254 52.4
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 9.9e-65 251.9 387 37.2
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 3.0e-61 240.4 149 77.2
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 3.1e-58 230.3 434 32.5
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 2.1e-54 217.6 235 49.8
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 4.6e-54 216.5 236 49.6
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 3.0e-53 213.8 137 75.9
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.5e-52 211.5 164 62.2
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.0e-37 162.2 100 70.0
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 3.4e-33 147.1 322 32.6
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 2.7e-30 137.5 88 70.5
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.2e-27 127.9 73 75.3
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 3.1e-26 124.0 56 96.4
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.4e-21 108.6 405 26.4
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 1.2e-14 85.5 97 45.4
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.8e-13 81.6 103 39.8
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 1.1e-07 62.4 62 45.2


User provided reference genes

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