Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.9e-62 242.3 119 100.0
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 5.6e-62 240.7 119 99.2
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 5.6e-62 240.7 119 99.2
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 5.6e-62 240.7 119 99.2
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 5.6e-62 240.7 119 99.2
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 5.6e-62 240.7 119 99.2
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 2.8e-61 238.4 119 98.3
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.9e-58 228.4 116 93.1
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.5e-51 206.1 117 82.1
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 79.8
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 79.8
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 79.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 8.4e-50 200.3 119 79.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 79.8
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.1e-49 199.9 118 80.5
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.1e-49 199.9 118 80.5
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.4e-49 198.7 118 79.7
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 4.2e-49 198.0 118 78.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 4.2e-49 198.0 119 79.8
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 78.0
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 5.4e-49 197.6 119 78.2
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 78.8
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 78.8
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 78.8
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 5.4e-49 197.6 118 81.4
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 9.3e-49 196.8 118 78.8
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 9.3e-49 196.8 119 79.8
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 9.3e-49 196.8 119 79.0
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 9.3e-49 196.8 118 76.3
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.2e-48 196.4 119 78.2
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 1.2e-48 196.4 116 80.2
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.6e-48 196.1 118 75.4
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.6e-48 196.1 116 80.2
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.6e-48 196.1 118 76.3
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.1e-48 195.7 116 81.0
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.7e-48 195.3 118 75.4
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 78.2
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 7.9e-48 193.7 118 77.1
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 7.9e-48 193.7 119 77.3
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.0e-47 193.4 118 78.8
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.0e-47 193.4 116 80.2
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.3e-47 193.0 119 78.2
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 80.5
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 80.5
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 80.5
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.7e-47 192.6 115 75.7
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 1.7e-47 192.6 119 77.3
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.7e-47 192.6 117 78.6
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 2.3e-47 192.2 119 78.2
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 75.2
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 3.0e-47 191.8 118 74.6
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.9e-47 191.4 118 76.3
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 3.9e-47 191.4 116 78.4
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.1e-47 191.0 119 75.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.6e-47 190.7 118 76.3
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 6.6e-47 190.7 117 76.1
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 6.6e-47 190.7 120 77.5
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 6.6e-47 190.7 127 74.0
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.1e-46 189.9 120 78.3
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.5e-46 189.5 118 76.3
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-46 189.5 119 77.3
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.9e-46 189.1 119 74.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.9e-46 189.1 119 74.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.9e-46 189.1 119 74.8
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 3.3e-46 188.3 119 74.8
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 71.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 71.4
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 5.6e-46 187.6 119 72.3
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 5.6e-46 187.6 118 74.6
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 7.3e-46 187.2 119 72.3
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 7.3e-46 187.2 119 71.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 7.3e-46 187.2 119 71.4
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 9.6e-46 186.8 119 70.6
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 9.6e-46 186.8 119 70.6
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 9.6e-46 186.8 119 70.6
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.3e-45 186.4 119 70.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.3e-45 186.4 119 70.6
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.3e-45 186.4 117 71.8
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.3e-45 186.4 121 72.7
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.6e-45 186.0 118 74.6
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 75.6
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 75.6
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.1e-45 185.7 119 71.4
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.1e-45 185.7 119 73.1
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 2.8e-45 185.3 119 71.4
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.8e-45 185.3 119 71.4
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 3.6e-45 184.9 119 69.7
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 3.6e-45 184.9 119 69.7
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.6e-45 184.9 119 72.3
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.2e-45 184.1 119 72.3
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.2e-45 184.1 119 73.1
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.2e-45 184.1 116 75.0
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 8.1e-45 183.7 119 73.1
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 8.1e-45 183.7 115 75.7
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.1e-44 183.3 119 71.4
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.4e-44 183.0 119 73.9
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.8e-44 182.6 115 74.8
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.8e-44 182.6 114 79.8
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 1.8e-44 182.6 118 71.2
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.4e-44 182.2 117 72.6
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 3.1e-44 181.8 119 72.3
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 4.0e-44 181.4 116 73.3
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 5.3e-44 181.0 119 71.4
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 9.0e-44 180.3 113 79.6
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.2e-43 179.9 119 73.1
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.2e-43 179.9 118 73.7
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.5e-43 179.5 117 73.5
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.0e-43 179.1 167 55.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 7.6e-43 177.2 130 67.7
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.7e-42 176.0 118 74.6
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 8.4e-42 173.7 119 67.2
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 8.4e-42 173.7 119 67.2
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 1.4e-41 172.9 119 68.1
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 2.1e-40 169.1 119 68.1
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 7.9e-40 167.2 119 69.7
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.0e-39 166.8 135 60.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 1.0e-39 166.8 114 69.3
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.3e-38 161.4 103 74.8
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.7e-37 158.3 101 72.3
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.4e-36 156.4 118 66.1
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.4e-36 155.6 101 75.2
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.4e-36 155.6 101 75.2
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 5.3e-36 154.5 97 76.3
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 9.0e-36 153.7 121 64.5
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.5e-35 151.4 98 72.4
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 4.5e-35 151.4 119 65.5
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 5.8e-35 151.0 98 72.4
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.3e-34 149.8 102 70.6
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 3.8e-34 148.3 114 61.4
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 4.2e-33 144.8 98 68.4
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.1e-32 142.5 100 69.0
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.0e-31 140.2 115 57.4
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 3.0e-31 138.7 119 63.9
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 6.7e-31 137.5 115 54.8
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 3.3e-30 135.2 113 57.5
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 2.4e-28 129.0 64 100.0
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 6.9e-28 127.5 96 67.7
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 7.2e-25 117.5 98 60.2
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.5e-22 109.0 59 88.1
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.3e-22 108.6 65 78.5
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-21 106.7 67 74.6
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.6e-21 106.3 59 84.7
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 3.7e-21 105.1 64 75.0
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 1.4e-20 103.2 65 73.8
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.4e-20 103.2 55 90.9
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 5.3e-20 101.3 59 79.7
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 9.0e-20 100.5 59 79.7
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 2.6e-19 99.0 88 60.2
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 7.7e-19 97.4 53 81.1
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.0e-18 97.1 61 70.5
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.3e-18 96.7 52 76.9
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.3e-18 96.7 138 44.2
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 5.0e-18 94.7 52 78.8
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 6.5e-18 94.4 54 75.9
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 8.5e-18 94.0 133 45.9
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 2.7e-16 89.0 50 74.0
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 3.6e-16 88.6 53 73.6
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 5.3e-12 74.7 72 54.2
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.0e-11 72.8 50 72.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 5.1e-07 58.2 33 81.8


User provided reference genes

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