Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 4.3e-62 241.1 119 100.0
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.6e-61 239.2 119 99.2
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.6e-61 239.2 119 99.2
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.6e-61 239.2 119 99.2
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.6e-61 239.2 119 99.2
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.6e-61 239.2 119 99.2
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 4.7e-61 237.7 119 98.3
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 8.4e-58 226.9 118 91.5
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.3e-50 203.0 117 81.2
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.8
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.8
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 2.4e-49 198.7 119 79.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 3.2e-49 198.4 119 79.8
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 9.3e-49 196.8 117 80.3
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 9.3e-49 196.8 119 79.8
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.2e-48 196.4 117 80.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.2e-48 196.4 117 80.3
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.6e-48 196.1 119 78.2
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.6e-48 196.1 117 79.5
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.7e-48 195.3 119 79.8
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.7e-48 195.3 119 79.0
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 3.5e-48 194.9 119 78.2
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 4.6e-48 194.5 117 78.6
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 4.6e-48 194.5 117 78.6
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 4.6e-48 194.5 117 78.6
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 6.0e-48 194.1 117 77.8
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 6.0e-48 194.1 117 81.2
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.0e-47 193.4 117 78.6
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.0e-47 193.4 117 76.1
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.3e-47 193.0 116 79.3
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 1.3e-47 193.0 115 80.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.7e-47 192.6 119 78.2
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.7e-47 192.6 117 75.2
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.7e-47 192.6 116 80.2
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.7e-47 192.6 117 76.1
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 2.3e-47 192.2 119 77.3
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 75.2
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 3.9e-47 191.4 119 78.2
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 5.1e-47 191.0 116 75.0
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 5.1e-47 191.0 119 77.3
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 6.6e-47 190.7 119 78.2
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 8.7e-47 190.3 117 76.9
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 8.7e-47 190.3 116 79.3
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.1e-46 189.9 117 78.6
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.1e-46 189.9 117 77.8
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.5e-46 189.5 119 75.6
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.9e-46 189.1 117 74.4
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 117 80.3
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 117 80.3
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.9e-46 189.1 117 80.3
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.9e-46 189.1 120 77.5
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 2.5e-46 188.7 117 74.4
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 3.3e-46 188.3 115 78.3
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 4.3e-46 188.0 117 76.1
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.6e-46 187.6 117 75.2
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 5.6e-46 187.6 119 74.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.6e-46 187.6 119 74.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 5.6e-46 187.6 119 74.8
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.6e-46 187.6 127 73.2
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 7.3e-46 187.2 117 76.1
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 9.6e-46 186.8 119 78.2
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 9.6e-46 186.8 119 74.8
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.3e-45 186.4 119 71.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 1.3e-45 186.4 119 71.4
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-45 186.4 118 77.1
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.6e-45 186.0 117 76.1
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 72.3
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.1e-45 185.7 119 72.3
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.8e-45 185.3 119 70.6
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 2.8e-45 185.3 119 70.6
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.8e-45 185.3 119 70.6
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.8e-45 185.3 119 70.6
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 2.8e-45 185.3 119 70.6
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.8e-45 185.3 117 71.8
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 3.6e-45 184.9 119 70.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 3.6e-45 184.9 119 70.6
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.6e-45 184.9 115 76.5
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 6.2e-45 184.1 119 71.4
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.2e-45 184.1 119 73.1
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 6.2e-45 184.1 117 74.4
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 8.1e-45 183.7 119 71.4
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 8.1e-45 183.7 119 71.4
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.1e-44 183.3 119 69.7
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.1e-44 183.3 119 69.7
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.1e-44 183.3 119 72.3
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.1e-44 183.3 121 71.9
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 74.4
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.8e-44 182.6 119 72.3
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.8e-44 182.6 119 73.1
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.8e-44 182.6 118 75.4
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.8e-44 182.6 118 75.4
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.4e-44 182.2 119 73.1
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.0e-44 181.4 116 74.1
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 9.0e-44 180.3 119 71.4
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 9.0e-44 180.3 119 72.3
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.2e-43 179.9 115 73.9
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.2e-43 179.9 119 73.1
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.2e-43 179.9 117 71.8
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.5e-43 179.5 114 78.9
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.5e-43 179.5 119 71.4
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 2.0e-43 179.1 117 70.9
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.4e-43 178.3 119 73.1
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 3.4e-43 178.3 118 73.7
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.4e-43 178.3 116 72.4
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.5e-43 177.9 117 73.5
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 5.8e-43 177.6 113 78.8
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.2e-42 175.6 166 55.4
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 2.2e-42 175.6 130 67.7
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.9e-41 172.6 117 74.4
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.2e-41 171.8 119 66.4
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.2e-41 171.8 119 66.4
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 5.4e-41 171.0 119 67.2
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 6.0e-40 167.5 119 68.1
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 1.8e-39 166.0 114 69.3
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 2.3e-39 165.6 119 69.7
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 3.0e-39 165.2 135 60.0
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 5.6e-38 161.0 102 75.5
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 8.1e-37 157.1 101 72.3
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-36 156.8 101 75.2
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-36 156.8 101 75.2
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.2e-35 153.3 120 65.0
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.5e-35 152.9 117 65.8
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.5e-35 151.4 98 72.4
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 4.5e-35 151.4 97 75.3
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 5.8e-35 151.0 98 72.4
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 2.2e-34 149.1 101 71.3
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 4.9e-34 147.9 118 65.3
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.5e-33 145.6 101 67.3
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 2.5e-33 145.6 114 60.5
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.1e-33 144.1 100 70.0
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 8.7e-31 137.1 113 57.5
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 8.7e-31 137.1 119 63.9
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 5.7e-30 134.4 111 58.6
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 5.7e-30 134.4 115 53.9
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 6.9e-28 127.5 96 67.7
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 2.0e-27 125.9 64 98.4
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 2.5e-25 119.0 98 61.2
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.2e-21 105.9 65 76.9
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.2e-21 105.9 59 86.4
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 8.2e-21 104.0 67 73.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.4e-20 103.2 59 83.1
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 3.1e-20 102.1 64 73.4
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 9.0e-20 100.5 65 72.3
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 9.0e-20 100.5 55 89.1
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 2.6e-19 99.0 59 79.7
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 2.6e-19 99.0 88 60.2
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 3.4e-19 98.6 53 83.0
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 4.5e-19 98.2 59 78.0
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.3e-18 96.7 61 70.5
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.7e-18 96.3 51 78.4
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 2.2e-18 95.9 54 77.8
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.5e-18 94.4 51 80.4
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.1e-17 93.6 138 43.5
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 7.2e-17 90.9 131 45.8
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 9.4e-17 90.5 52 73.1
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 4.6e-16 88.2 53 73.6
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.5e-11 73.2 72 54.2
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.6e-11 72.4 49 73.5
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 5.1e-07 58.2 33 81.8


User provided reference genes

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