Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 2.2e-85 318.9 161 100.0
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.2e-28 129.0 64 100.0
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.2e-28 129.0 64 100.0
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.2e-28 129.0 64 100.0
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 3.2e-28 129.0 64 100.0
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.2e-28 129.0 64 100.0
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.2e-28 129.0 64 100.0
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.6e-27 126.7 64 98.4
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 8.8e-26 120.9 64 89.1
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 3.7e-24 115.5 64 84.4
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 4.1e-23 112.1 64 81.2
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 6.9e-23 111.3 69 78.3
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.5e-22 110.2 64 81.2
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.6e-22 109.4 81 65.4
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 2.6e-22 109.4 61 82.0
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 3.4e-22 109.0 59 88.1
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.4e-22 109.0 64 79.7
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.9e-22 108.2 64 79.7
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 5.9e-22 108.2 59 86.4
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 7.7e-22 107.8 64 78.1
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 7.7e-22 107.8 64 78.1
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 7.7e-22 107.8 64 78.1
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.0e-21 107.5 71 74.6
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.0e-21 107.5 71 74.6
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.0e-21 107.5 61 85.2
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.0e-21 107.5 65 81.5
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.3e-21 107.1 64 78.1
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.3e-21 107.1 64 76.6
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 1.3e-21 107.1 71 74.6
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.3e-21 107.1 71 74.6
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.3e-21 107.1 64 76.6
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.7e-21 106.7 71 76.1
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.7e-21 106.7 59 84.7
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.7e-21 106.7 59 84.7
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.7e-21 106.7 61 80.3
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.7e-21 106.7 59 81.4
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 2.2e-21 106.3 61 83.6
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 2.2e-21 106.3 55 89.1
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 2.2e-21 106.3 59 84.7
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.2e-21 106.3 59 83.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 2.2e-21 106.3 59 84.7
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.9e-21 105.9 59 81.4
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.9e-21 105.9 59 84.7
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 3.8e-21 105.5 62 77.4
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 3.8e-21 105.5 64 79.7
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 5.0e-21 105.1 64 78.1
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 5.0e-21 105.1 59 83.1
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 5.0e-21 105.1 61 78.7
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 5.0e-21 105.1 64 76.6
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 5.0e-21 105.1 64 75.0
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 6.5e-21 104.8 56 85.7
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 6.5e-21 104.8 64 76.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 6.5e-21 104.8 61 85.2
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 6.5e-21 104.8 61 85.2
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 6.5e-21 104.8 61 85.2
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 8.5e-21 104.4 56 85.7
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 8.5e-21 104.4 59 81.4
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 8.5e-21 104.4 64 78.1
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 8.5e-21 104.4 60 80.0
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-20 104.0 65 73.8
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-20 104.0 60 78.3
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.1e-20 104.0 57 80.7
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.1e-20 104.0 64 76.6
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.1e-20 104.0 64 76.6
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.4e-20 103.6 55 90.9
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.4e-20 103.6 57 84.2
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.4e-20 103.6 60 80.0
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.4e-20 103.6 78 64.1
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.9e-20 103.2 64 75.0
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.9e-20 103.2 71 71.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.9e-20 103.2 71 71.8
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.9e-20 103.2 67 76.1
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.9e-20 103.2 64 78.1
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.5e-20 102.8 83 60.2
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.5e-20 102.8 83 60.2
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.5e-20 102.8 64 75.0
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.5e-20 102.8 64 75.0
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 3.2e-20 102.4 64 73.4
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 3.2e-20 102.4 71 71.8
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 3.2e-20 102.4 71 74.6
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 3.2e-20 102.4 60 81.7
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 3.2e-20 102.4 60 81.7
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 4.2e-20 102.1 71 70.4
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.5e-20 101.7 60 78.3
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 7.2e-20 101.3 54 85.2
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 7.2e-20 101.3 64 76.6
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 7.2e-20 101.3 81 59.3
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.2e-20 101.3 71 70.4
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 7.2e-20 101.3 58 79.3
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 7.2e-20 101.3 61 75.4
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 7.2e-20 101.3 56 85.7
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 7.2e-20 101.3 59 79.7
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 9.4e-20 100.9 63 71.4
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 9.4e-20 100.9 61 77.0
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 1.2e-19 100.5 59 79.7
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.2e-19 100.5 56 83.9
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 1.2e-19 100.5 63 71.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.2e-19 100.5 62 72.6
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.2e-19 100.5 64 73.4
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.6e-19 100.1 63 69.8
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 1.6e-19 100.1 63 69.8
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 1.6e-19 100.1 63 69.8
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 1.6e-19 100.1 63 69.8
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.1e-19 99.8 63 69.8
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 2.1e-19 99.8 61 73.8
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.7e-19 99.4 63 69.8
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.7e-19 99.4 63 69.8
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 3.6e-19 99.0 63 68.3
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 3.6e-19 99.0 63 68.3
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 3.6e-19 99.0 63 68.3
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 4.7e-19 98.6 63 68.3
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 4.7e-19 98.6 63 68.3
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 4.7e-19 98.6 63 68.3
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 4.7e-19 98.6 63 68.3
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.7e-19 98.6 61 70.5
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 4.7e-19 98.6 61 73.8
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 6.1e-19 98.2 83 56.6
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.1e-19 98.2 71 69.0
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 7.9e-19 97.8 71 73.2
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 7.9e-19 97.8 62 71.0
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 7.9e-19 97.8 79 60.8
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.0e-18 97.4 64 73.4
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.4e-18 97.1 62 74.2
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.4e-18 97.1 80 60.0
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.4e-18 97.1 56 82.1
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 2.3e-18 96.3 63 68.3
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.3e-18 96.3 71 73.2
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 2.3e-18 96.3 60 76.7
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.6e-17 92.8 59 72.9
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 6.3e-16 88.2 53 71.7
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.1e-15 87.4 123 42.3
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 5.3e-15 85.1 62 62.9
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 2.6e-14 82.8 57 63.2
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 3.8e-13 79.0 79 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 2.5e-12 76.3 53 64.2
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 4.2e-12 75.5 64 56.2
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 7.2e-12 74.7 72 54.2
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-11 73.6 46 73.9
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.6e-11 72.4 49 69.4
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.7e-11 72.0 46 73.9
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 6.1e-11 71.6 41 80.5
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 8.0e-11 71.2 53 62.3
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.4e-10 70.5 46 76.1
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.4e-10 70.5 46 76.1
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.8e-10 70.1 52 65.4
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.3e-10 69.7 42 76.2
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 8.8e-10 67.8 60 61.7
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.1e-09 67.4 49 67.3
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.1e-07 60.8 45 64.4
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 7.0e-07 58.2 33 81.8
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 5.9e-06 55.1 39 74.4


User provided reference genes

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