Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb376080 Zea mays HOM05D003520 ORTHO05D003332 1.3e-186 656.4 369 100.0
Zm00001eb338110 Zea mays HOM05D003520 ORTHO05D003332 3.2e-108 396.0 400 62.5
Zm00001eb048990 Zea mays HOM05D003520 ORTHO05D003332 6.8e-82 308.5 153 97.4
Os04g0273900 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 8.9e-58 228.4 161 63.4
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 7.3e-52 208.8 153 60.1
Os04g0193200 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 1.2e-51 208.0 149 61.1
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 1.1e-39 168.3 185 46.5
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 7.4e-20 102.4 142 40.1
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 7.4e-20 102.4 178 34.3
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.7e-19 100.1 180 33.9
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 6.2e-19 99.4 144 39.6
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.1e-18 98.6 159 37.1
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.8e-18 97.8 140 37.1
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.8e-18 97.8 140 37.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 2.4e-18 97.4 173 33.5
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 3.1e-18 97.1 167 34.1
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 3.1e-18 97.1 129 38.0
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 5.3e-18 96.3 134 39.6
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.6e-17 94.0 138 39.1
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.4e-17 93.6 138 39.9
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.7e-16 91.3 157 33.1
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 2.2e-16 90.9 132 40.9
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.9e-16 90.5 188 31.9
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 3.8e-16 90.1 130 40.8
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 3.8e-16 90.1 152 35.5
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 8.4e-16 89.0 137 38.0
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 4.2e-15 86.7 138 36.2
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 5.5e-15 86.3 121 38.8
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 5.5e-15 86.3 171 32.2
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 5.5e-15 86.3 135 34.8
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 5.5e-15 86.3 132 37.1
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 9.3e-15 85.5 173 30.1
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 9.3e-15 85.5 134 35.1
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 9.3e-15 85.5 180 30.6
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.2e-14 85.1 150 36.0
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.6e-14 84.7 134 35.1
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 3.5e-14 83.6 152 32.2
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 4.6e-14 83.2 125 41.6
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 6.1e-14 82.8 129 39.5
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 6.1e-14 82.8 181 31.5
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 7.9e-14 82.4 167 31.1
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 7.9e-14 82.4 125 40.8
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 1.0e-13 82.0 150 34.7
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.3e-13 81.6 135 40.0
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 2.3e-13 80.9 173 30.1
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 3.0e-13 80.5 168 30.4
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 3.9e-13 80.1 145 34.5
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 5.1e-13 79.7 134 33.6
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 5.1e-13 79.7 133 36.8
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 5.1e-13 79.7 135 31.1
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 6.7e-13 79.3 133 36.8
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 6.7e-13 79.3 172 29.1
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 8.7e-13 79.0 136 35.3
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 8.7e-13 79.0 135 35.6
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.1e-12 78.6 172 28.5
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.1e-12 78.6 139 36.0
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 1.1e-12 78.6 157 29.3
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.1e-12 78.6 157 29.3
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.1e-12 78.6 136 34.6
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 3.3e-12 77.0 134 33.6
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 7.4e-12 75.9 194 26.8
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 7.4e-12 75.9 157 28.7
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 9.7e-12 75.5 157 28.7
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.3e-11 75.1 171 28.1
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.3e-11 75.1 128 33.6
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.7e-11 73.6 170 30.0
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.1e-10 72.0 173 26.6
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 1.4e-10 71.6 162 29.6
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.8e-10 71.2 250 25.2
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 2.4e-10 70.9 168 30.4
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 3.1e-10 70.5 131 33.6
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 1.2e-09 68.6 168 31.5
Zm00001eb297870 Zea mays HOM05D003276 ORTHO05D003809 1.5e-09 68.2 33 97.0
Zm00001eb345540 Zea mays HOM05D003276 ORTHO05D003809 1.5e-09 68.2 33 97.0
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.6e-09 67.4 193 26.9
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 3.4e-09 67.0 115 38.3
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 3.4e-09 67.0 161 30.4
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 4.5e-09 66.6 140 27.1
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 4.5e-09 66.6 68 45.6
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 5.9e-09 66.2 55 47.3
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 5.9e-09 66.2 85 41.2
Zm00001eb081920 Zea mays HOM05D003276 ORTHO05D003809 5.9e-09 66.2 33 93.9
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 7.7e-09 65.9 128 32.8
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 7.7e-09 65.9 127 32.3
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 7.7e-09 65.9 127 32.3
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 2.9e-08 63.9 182 26.9
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 8.5e-08 62.4 54 53.7
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 8.5e-08 62.4 54 53.7
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 8.5e-08 62.4 163 28.8
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.1e-07 62.0 98 37.8
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-07 62.0 55 52.7
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.9e-07 61.2 82 36.6
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.5e-07 60.8 53 50.9
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 2.5e-07 60.8 54 51.9
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.5e-07 60.8 104 34.6
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 3.2e-07 60.5 158 26.6
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 3.2e-07 60.5 156 31.4
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.2e-07 60.1 53 50.9
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 5.5e-07 59.7 92 34.8
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 7.2e-07 59.3 186 24.2
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 7.2e-07 59.3 56 50.0
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 9.4e-07 58.9 54 51.9
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.2e-06 58.5 47 57.4
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 2.1e-06 57.8 62 40.3
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.7e-06 57.4 191 24.1
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 2.7e-06 57.4 164 26.2
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 2.7e-06 57.4 57 45.6
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 3.6e-06 57.0 135 28.1
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 3.6e-06 57.0 99 35.4


User provided reference genes

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