Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 8.6e-196 686.8 347 100.0
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 1.3e-114 417.2 280 73.2
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 1.6e-112 410.2 274 70.8
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 4.5e-112 408.7 277 72.6
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 7.7e-112 407.9 271 71.2
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 7.7e-112 407.9 274 70.4
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.7e-111 406.8 270 70.4
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 2.2e-111 406.4 276 69.9
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 2.2e-111 406.4 274 71.5
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.9e-111 406.0 280 70.0
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 3.8e-111 405.6 274 70.8
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 5.0e-111 405.2 295 68.8
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 5.0e-111 405.2 280 70.0
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 5.0e-111 405.2 280 68.6
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 8.5e-111 404.4 280 69.6
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 1.5e-110 403.7 297 65.7
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.9e-110 403.3 285 69.1
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 2.5e-110 402.9 280 68.6
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 3.2e-110 402.5 275 70.9
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 4.2e-110 402.1 289 68.9
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 5.5e-110 401.7 265 72.8
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 7.2e-110 401.4 308 65.3
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.2e-109 400.6 289 68.9
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 1.2e-109 400.6 289 68.9
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 1.6e-109 400.2 297 66.3
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 1.0e-108 397.5 280 70.0
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 1.4e-108 397.1 272 68.4
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 1.4e-108 397.1 300 65.7
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.8e-108 396.7 274 70.4
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 2.3e-108 396.4 263 70.3
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 2.3e-108 396.4 276 69.2
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 2.3e-108 396.4 279 69.2
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 2.3e-108 396.4 278 68.7
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 4.0e-108 395.6 286 67.8
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 6.8e-108 394.8 307 65.8
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 6.8e-108 394.8 277 67.9
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 6.8e-108 394.8 271 70.1
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 8.8e-108 394.4 264 71.6
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 1.2e-107 394.0 282 66.0
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 1.2e-107 394.0 285 68.4
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 1.5e-107 393.7 293 68.6
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 2.6e-107 392.9 276 67.4
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 2.6e-107 392.9 290 68.3
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 3.4e-107 392.5 270 69.6
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 4.4e-107 392.1 276 67.0
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 4.4e-107 392.1 276 67.4
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 4.4e-107 392.1 282 66.0
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 4.4e-107 392.1 308 64.9
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 4.4e-107 392.1 303 65.3
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 7.5e-107 391.3 322 63.4
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 1.3e-106 390.6 278 69.8
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 1.7e-106 390.2 262 69.8
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 1.7e-106 390.2 284 66.9
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 1.7e-106 390.2 302 63.9
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 2.8e-106 389.4 264 70.8
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 2.8e-106 389.4 300 65.0
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 2.8e-106 389.4 274 68.6
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 2.8e-106 389.4 297 63.3
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.7e-106 389.0 286 69.2
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 3.7e-106 389.0 283 67.1
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 4.8e-106 388.7 287 66.9
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 8.3e-106 387.9 285 65.3
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 8.3e-106 387.9 279 68.1
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 8.3e-106 387.9 265 70.6
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 1.4e-105 387.1 266 69.5
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 1.4e-105 387.1 314 61.5
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.4e-105 387.1 309 63.1
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 2.4e-105 386.3 272 70.2
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.1e-105 385.6 307 63.2
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 9.1e-105 384.4 315 62.9
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 1.2e-104 384.0 273 67.0
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.6e-104 383.6 270 67.4
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 1.6e-104 383.6 269 68.0
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 3.5e-104 382.5 273 68.5
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.0e-103 380.9 286 67.1
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.0e-103 380.9 297 63.0
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 1.3e-103 380.6 286 65.0
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 1.1e-102 377.5 281 65.5
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.1e-102 377.5 288 66.3
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 1.9e-102 376.7 276 65.6
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 7.2e-102 374.8 283 65.4
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 7.2e-102 374.8 300 63.0
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 1.2e-101 374.0 263 70.7
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 3.6e-101 372.5 288 66.0
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 6.1e-101 371.7 289 64.0
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 2.3e-100 369.8 275 64.0
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 8.9e-100 367.9 280 66.1
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.2e-99 367.5 270 66.3
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 1.2e-99 367.5 288 63.9
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 1.5e-99 367.1 280 66.1
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 1.5e-99 367.1 290 63.8
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.0e-99 366.7 261 67.0
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 2.6e-99 366.3 291 63.2
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 4.4e-99 365.5 316 60.1
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 1.3e-98 364.0 256 67.2
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.7e-98 363.6 271 64.9
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.2e-98 363.2 288 65.3
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 1.1e-97 360.9 280 65.7
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 4.1e-97 359.0 261 64.8
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 3.9e-95 352.4 279 62.4
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 1.5e-83 313.9 268 59.0
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 8.6e-79 298.1 285 53.0
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 7.3e-78 295.0 329 52.3
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 2.6e-75 286.6 303 51.5
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 6.2e-69 265.4 176 73.3
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 3.1e-68 263.1 274 52.2
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 2.7e-64 250.0 320 46.6
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 1.1e-62 244.6 283 48.4
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 3.2e-57 226.5 276 48.2
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 1.2e-56 224.6 273 47.3
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.0e-51 207.2 298 41.6
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 6.3e-21 105.9 107 52.3
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 3.2e-09 67.0 63 49.2
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 2.3e-07 60.8 43 69.8
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 1.1e-06 58.5 87 44.8
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 1.1e-06 58.5 40 60.0
SMO274G0017 Selaginella moellendorffii HOM05D006382 ORTHO05D378957 1.1e-06 58.5 168 32.1


User provided reference genes

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